Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01569 ATGTTCCACGATGGTCAGACTGGGTCACAGTTGGATGATGAGGGTTATGACGGAAGTGCCTGTGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGCCAATTATGTCAAGAAGAATGGAGAGGGGAACTGGAATGCCGTACATAAGCATACAGGCCTGCTACGTTGTGGAAAAAGTTGTCGATTGCGGTGGGCTAATCACCTGAGGCCAAATTTAAAGAAAGGGACATTTACTGCAGGAGAGGAGCAGTTGATTTGTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAAGCTTTTTGCCTGGTCGTACAGATAATGAGATAAAGAACTATTGGAACACTCGGATCAAGAGGCGTAACCGAGCTGGCTTGCCACTTTATCCCCCTGAAGTATTGCAAAAGATTCTTCATGTGCAAAGCACTGGTGGAATTAATGGTCGCAATAAAGTGCGTCCTGATTTCTTGCAGAAAAAGTGTTTCGATAAACATGATGCAATATTTGGCTCTCTGAAGGATAACCAGGGAATCTTACCTTATGTGCCTGAGCTTCCTGATATTTCTGCTTATGGCAATATGCTAAATGGTTTTGATTCTTCTCAGTATTGTAGTTTTGTGCCATCGACATCTTCTAACCACAAACGTTTCCGAGAGTCAACGATGCCATTTCTTGATTTCAGTTATATTGACAGAAATGATTTTTATCCATGTGATCATGTTCAGGATGATACTTTTAATAAGTTGACACAATCATTCGGGGTGCAACCACCCCTTGATCCTGGTCCCTCCTTACACAGCTCAATGTGTTACAGCCATTCAATTATGAATGACAATTCCTCTACTTCTAAGCCTTTCGAGGCTGCGAAATTGGAGCTCCCTTCACTCCAAAATTCAGAAATTGATTTAGGTAGCTGGGTTACATCTCCCCCGCCTCCTTTACTTGAGTCAATTGATGATTTCATTCAGTCTCCTGCACCAGTTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTTCTGCAATCTGTACTTTATCAGTGGAAGACTCCAAGCAGTTCAAAAAACCAATATTATGACAAGAGTTCAAATTCTTCTACTGCAACTCCTGGTGAAAGAGAAGACAGCTCTGCTTTGAACATGTGTGAGACAGAATGGGAAGACTATGCTGACCCTGTATCTCCATTTGGCGCGTCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAACAGAAATTCACTAGATGAGCAGCCACCTGTTCATACCATTAATGGCAACAATGTGAAATGCGAGTATGTTGACCAGGTTTGGACCCCTGACAGTGAAAATCAAACCACGTCTCTTTTGAACTTTAGTCGGCCCGATTTCTTGCTTGCTTCTGGTTGGTATGAGCCATACTCCGGGCATGACAAGAACCAATCCATGACTGGTGCTACATCAATGTTTTTCGAAGATCAATTAGCCACAAACTATAAACATACGACTGCTGGAACTTCTAACCCAAGTCAGGTATGGGAGTTTGGTTCTCTTGCATGGAACAACATGCCTGCTGTCTATCAAATATCTGATCTTGGTTAA 1611 0.4277 MFHDGQTGSQLDDEGYDGSACGVVLKKGPWTSAEDDILANYVKKNGEGNWNAVHKHTGLLRCGKSCRLRWANHLRPNLKKGTFTAGEEQLICELHAKMGNKWARMASFLPGRTDNEIKNYWNTRIKRRNRAGLPLYPPEVLQKILHVQSTGGINGRNKVRPDFLQKKCFDKHDAIFGSLKDNQGILPYVPELPDISAYGNMLNGFDSSQYCSFVPSTSSNHKRFRESTMPFLDFSYIDRNDFYPCDHVQDDTFNKLTQSFGVQPPLDPGPSLHSSMCYSHSIMNDNSSTSKPFEAAKLELPSLQNSEIDLGSWVTSPPPPLLESIDDFIQSPAPVSTLESDCSSPQNSGLLQSVLYQWKTPSSSKNQYYDKSSNSSTATPGEREDSSALNMCETEWEDYADPVSPFGASSILNECPAVSANRNSLDEQPPVHTINGNNVKCEYVDQVWTPDSENQTTSLLNFSRPDFLLASGWYEPYSGHDKNQSMTGATSMFFEDQLATNYKHTTAGTSNPSQVWEFGSLAWNNMPAVYQISDLG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01569 536 Gene3D - 26 79 - -
Trre15g01569 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Trre15g01569 536 MobiDBLite consensus disorder prediction 363 384 - -
Trre15g01569 536 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Trre15g01569 536 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Trre15g01569 536 SUPERFAMILY Homeodomain-like 26 121 IPR009057 -
Trre15g01569 536 MobiDBLite consensus disorder prediction 363 388 - -
Trre15g01569 536 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Trre15g01569 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Trre15g01569 536 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 15 493 - -
Trre15g01569 536 Gene3D - 82 128 - -
Trre15g01569 536 FunFam Transcription factor GAMYB 82 128 - -
Trre15g01569 536 FunFam MYB-related transcription factor 26 79 - -
Trre15g01569 536 ProSiteProfiles Myb-like domain profile. 25 74 IPR001005 -
Trre15g01569 536 SMART sant 79 127 IPR001005 -
Trre15g01569 536 SMART sant 26 76 IPR001005 -
Trre15g01569 536 CDD SANT 29 74 IPR001005 -
Trre15g01569 536 CDD SANT 82 123 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01569 Trre-Chr15 12544570 12547538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01569 24 532 MYB Transcription Factor Family AT3G11440 41.917 5.79e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g01569 Myb_DNA-binding 6.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01569 K09422 - gmx:100810415 740.725