Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01567 ATGTCTGATGAATCACAGAGGGTTGTAGTGATCCACCATGCATCTAGAGACTTCAGTGCAAGAGCTCTTAAATGGGCCATTAATGGCTTTTCACTTGAGCATGGAGATAGCCTTACACTTGTTTCAATTCTTCACCATGTCAAGAGTCCAACTAGTGCCAAATTTCGGGCAATATTTGGTACTGATCAAAATATTGTTGATGAAGAGATTTCAAAGAAGAAAGAAAAGATGTATAATAATGCATGTATCAAGAAAATTACCGAGAAGTGTCAAACACACAAGATTCAGTTCATGATAGAAGTTCTTCCTGGGAAGTTACCAGAGCTTGCTATAGATGCTGCCATCCGTTTGAATGCAACATCAGTTATACTTGATAGAGATATGAAGAAATACAAGAAGGATTTCATGCAGAGTCTCTCTTGTGCTTTGCTTATAATGAAACGTGATCACTCCATTAAGCACTTGAAAGGGCCATGGAAAACAATGATTTCTTTTAGAGGATATGACAATGAAAGTTTTGAAAAATGTTCTGAATCCTCACCAAGTTTGTGGAGCATGGCAAACGCCGTTTTCCGCTCCAAATCGAGCTGTAATCTTAGAAAAATCGTTTGTCATCAAATTCATTGTCAAATAAAACAAACTCCTGAAGATAGAGATCTAGATATGGCAAGAGTGTGTGAGAACAAAAGGCCAAAATTTGAATTGATGAAAGAATACACATATGTTGAGCTCCATGAAGCAACGCATGGTTTTTCGCCAAAGAATTATTTATCAGAAGGCGGATTCGGTTCTGTTTATTGGGGAAAGCTACACGGACTAAAGATTGCGGTTAAGAAACATAAGTTTGCAAGTCTTCAAGGAGAGAAAGAATTCAAATCTGAAGTTAATGCACTAAGCAAAGCAATACATGAAAATGTGGTCATGCTGTTAGGGTCTTGTTCCGAGGGAAATAACAGATTTCTCGTATATGAATTTGTTTGCGATGGCTCACTTGATCAGCATTTATCGCAACATTCTAGAAAACCTCTTTATTGGCCAGCCAGGATCAAAGTGGCCATTGGAGCTGCAAAAGGCTTGTTATATTTGCATGAGAATAATATAATACACAGAGATGTTAGACCAAGTAACATCCTTGTTACACATGATTATGAAGCAATGTTGGGAGATTTTGGACTGGCTAGAACTGAACAAATGGACTCAGTGTACTCAACAGATGTTGTTGGAACATTAGGGTATATGGCACCAGAATATGCAGAATCTGGTAAAGTGTCAACCAAGTCAGATGTGTATTCTTTTGGGGTGGTGCTTCTTCAGTTAATAACAGGAATGAGGACAACAGACAAAAGGATTGGAAATAAAAGTCTTGTGGGATGGGCTAGGCCATTACTGAAGGAAAGGAACTATCCAGATCTAATTGACGAAAGGATGATGGATACCTATGATTGTCATCAGCTTTTTTGGATGATTCGTCTAGCAGAAAAATGTCTCACCAGGGATCCTCAGAAGCGATTATCAATGGATACAGTGGTTAGTGCATTAACTCATATAGTAGAAGGCAACACATGTAGCATGGTACTAAGAGACTGTTCACCAGCACGGTCAGATTCATCCTATGACATGTCAGAATCTCTTTTATCAGAAGATGTCTCTCCAGGATTAGATTATGATGATGATGAAGAAGAAGATGGAATCGTCTGTGTAGGATGTAACGCAATTAATTTACGACCCCCACCATCTCCTCCTTTAGGAAGCACTTCATGGAGTACAACAAGGCACAAGTATGTATATACACAAGGCTGA 1800 0.3872 MSDESQRVVVIHHASRDFSARALKWAINGFSLEHGDSLTLVSILHHVKSPTSAKFRAIFGTDQNIVDEEISKKKEKMYNNACIKKITEKCQTHKIQFMIEVLPGKLPELAIDAAIRLNATSVILDRDMKKYKKDFMQSLSCALLIMKRDHSIKHLKGPWKTMISFRGYDNESFEKCSESSPSLWSMANAVFRSKSSCNLRKIVCHQIHCQIKQTPEDRDLDMARVCENKRPKFELMKEYTYVELHEATHGFSPKNYLSEGGFGSVYWGKLHGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCDGSLDQHLSQHSRKPLYWPARIKVAIGAAKGLLYLHENNIIHRDVRPSNILVTHDYEAMLGDFGLARTEQMDSVYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKRIGNKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPQKRLSMDTVVSALTHIVEGNTCSMVLRDCSPARSDSSYDMSESLLSEDVSPGLDYDDDEEEDGIVCVGCNAINLRPPPSPPLGSTSWSTTRHKYVYTQG 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01567 599 ProSiteProfiles Protein kinase domain profile. 251 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01567 599 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 326 528 - -
Trre15g01567 599 FunFam Proline-rich receptor-like protein kinase PERK8 213 325 - -
Trre15g01567 599 SMART tyrkin_6 251 513 IPR020635 GO:0004713|GO:0006468
Trre15g01567 599 Gene3D HUPs 1 146 IPR014729 -
Trre15g01567 599 PANTHER OS01G0253100 PROTEIN 194 518 - -
Trre15g01567 599 ProSitePatterns Tyrosine protein kinases specific active-site signature. 367 379 IPR008266 GO:0004672|GO:0006468
Trre15g01567 599 Gene3D Transferase(Phosphotransferase) domain 1 327 529 - -
Trre15g01567 599 SUPERFAMILY Protein kinase-like (PK-like) 236 530 IPR011009 -
Trre15g01567 599 Gene3D Phosphorylase Kinase; domain 1 222 325 - -
Trre15g01567 599 CDD USP_Like 7 124 - -
Trre15g01567 599 Pfam Protein tyrosine and serine/threonine kinase 255 513 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01567 Trre-Chr15 12539312 12543698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01567 239 527 Trihelix Transcription Factor Family AT5G38560 44.040 2.76e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre15g01567 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01567 - - lsv:128129542 952.97