Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01566 ATGTCTGATGAATCACAGAGGGTTGTAGTGATCCACCATGCATCTAGAGACTTCAGTGCAAGAGCTCTTAAATGGGCCATTAATGGCTTTTCACTTGAGCATGGAGATAGCCTTACACTTGTTTCAATTCTTCACCATGTCAAGAGTCCAACTAGTGCCAAATTTCGGGCAATATTTGGTACTGATCAAAATATTGTTGATGAAGAGATTTCAAAGAAGAAAGAAAAGATGTATAATAATGCATGTATCAAGAAAATTACCGAGAAGTGTCAAACACACAAGATTCAGTTCATGATAGAAGTTCTTCCTGGGAAGTTACCAGAGCTTGCTATAGATGCTGCCATCCGTTTGAATGCAACATCAGTTATACTTGATAGAGATATGAAGAAATACAAGAAGGATTTCATGCAGAGTCTCTCTTGTGCTTTGCTTATAATGAAACGTGATCACTCCATTAAGCACTTGAAAGGGCCATGGAAAACAATGATTTCTTTTAGAGGATATGACAATGAAAGTTTTGAAAAATGTTCTGAATCCTCACCAAGTTTGTGGAGCATGGCAAACGCCGTTTTCCGCTCCAAATCGAGCTGTAATCTTAGAAAAATCGTTTGTCATCAAATTCATTGTCAAATAAAACAAACTCCTGAAGATAGAGATCTAGATATGGCAAGAGGTTATTGCTTATTACCTGGTGCTCCTGAAATGTATCACAATGAGACAACAATTGGACATATTAGCAACCATGAATCATATCATATAGTTGAAAAATTCAAAAATTCGGTTTGCTCAGTGTGTGAGAACAAAAGGCCAAAATTTGAATTGATGAAAGAATACACATATGTTGAGCTCCATGAAGCAACGCATGGTTTTTCGCCAAAGAATTATTTATCAGAAGGCGGATTCGGTTCTGTTTATTGGGGAAAGCTACACGGACTAAAGATTGCGGTTAAGAAACATAAGTTTGCAAGTCTTCAAGGAGAGAAAGAATTCAAATCTGAAGTTAATGCACTAAGCAAAGCAATACATGAAAATGTGGTCATGCTGTTAGGGTCTTGTTCCGAGGGAAATAACAGATTTCTCGTATATGAATTTGTTTGCGATGGCTCACTTGATCAGCATTTATCGCAACATTCTAGAAAACCTCTTTATTGGCCAGCCAGGATCAAAGTGGCCATTGGAGCTGCAAAAGGCTTGTTATATTTGCATGAGAATAATATAATACACAGAGATGTTAGACCAAGTAACATCCTTGTTACACATGATTATGAAGCAATGTTGGGAGATTTTGGACTGGCTAGAACTGAACAAATGGACTCAGTGTACTCAACAGATGTTGTTGGAACATTAGGGTATATGGCACCAGAATATGCAGAATCTGGTAAAGTGTCAACCAAGTCAGATGTGTATTCTTTTGGGGTGGTGCTTCTTCAGTTAATAACAGGAATGAGGACAACAGACAAAAGGATTGGAAATAAAAGTCTTGTGGGATGGGCTAGGCCATTACTGAAGGAAAGGAACTATCCAGATCTAATTGACGAAAGGATGATGGATACCTATGATTGTCATCAGCTTTTTTGGATGATTCGTCTAGCAGAAAAATGTCTCACCAGGGATCCTCAGAAGCGATTATCAATGGATACAGTGGTTAGTGCATTAACTCATATAGTAGAAGGCAACACATGTAGCATGGTACTAAGAGACTGTTCACCAGCACGGTCAGATTCATCCTATGACATGTCAGAATCTCTTTTATCAGAAGATGTCTCTCCAGGATTAGATTATGATGATGATGAAGAAGAAGATGGAATCGTCTGTGTAGGATGTAACGCAATTAATTTACGACCCCCACCATCTCCTCCTTTAGGAAGCACTTCATGGAGTACAACAAGGCACAAGTATGTATATACACAAGGCTGA 1917 0.3839 MSDESQRVVVIHHASRDFSARALKWAINGFSLEHGDSLTLVSILHHVKSPTSAKFRAIFGTDQNIVDEEISKKKEKMYNNACIKKITEKCQTHKIQFMIEVLPGKLPELAIDAAIRLNATSVILDRDMKKYKKDFMQSLSCALLIMKRDHSIKHLKGPWKTMISFRGYDNESFEKCSESSPSLWSMANAVFRSKSSCNLRKIVCHQIHCQIKQTPEDRDLDMARGYCLLPGAPEMYHNETTIGHISNHESYHIVEKFKNSVCSVCENKRPKFELMKEYTYVELHEATHGFSPKNYLSEGGFGSVYWGKLHGLKIAVKKHKFASLQGEKEFKSEVNALSKAIHENVVMLLGSCSEGNNRFLVYEFVCDGSLDQHLSQHSRKPLYWPARIKVAIGAAKGLLYLHENNIIHRDVRPSNILVTHDYEAMLGDFGLARTEQMDSVYSTDVVGTLGYMAPEYAESGKVSTKSDVYSFGVVLLQLITGMRTTDKRIGNKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLTRDPQKRLSMDTVVSALTHIVEGNTCSMVLRDCSPARSDSSYDMSESLLSEDVSPGLDYDDDEEEDGIVCVGCNAINLRPPPSPPLGSTSWSTTRHKYVYTQG 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01566 638 ProSiteProfiles Protein kinase domain profile. 290 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01566 638 Gene3D Transferase(Phosphotransferase) domain 1 366 568 - -
Trre15g01566 638 FunFam Proline-rich receptor-like protein kinase PERK8 252 364 - -
Trre15g01566 638 Pfam Protein tyrosine and serine/threonine kinase 294 552 IPR001245 GO:0004672|GO:0006468
Trre15g01566 638 Gene3D Phosphorylase Kinase; domain 1 261 364 - -
Trre15g01566 638 Gene3D HUPs 1 145 IPR014729 -
Trre15g01566 638 SUPERFAMILY Protein kinase-like (PK-like) 275 569 IPR011009 -
Trre15g01566 638 CDD USP_Like 7 124 - -
Trre15g01566 638 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 365 567 - -
Trre15g01566 638 PANTHER OS01G0253100 PROTEIN 217 557 - -
Trre15g01566 638 ProSitePatterns Tyrosine protein kinases specific active-site signature. 406 418 IPR008266 GO:0004672|GO:0006468
Trre15g01566 638 SMART tyrkin_6 290 552 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01566 Trre-Chr15 12539312 12543698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01566 278 566 Trihelix Transcription Factor Family AT5G38560 44.040 8.42e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Trre15g01566 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01566 - - lsv:128129542 1020.38