LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01553	ATGACATGTACTACAAGGTTTCTAAGCTTCATTATACTTCATATATTCTTCTTAACCTTAACAAATGCACAGTCACCATTTTATGTGATAAGTTTTTGCCAGAATTCAACTGAAGAAACAGACATCACATCATACCGATCCAACGTTAACAATGTCCTTTCATGGATAAACTCTAATTCTGCTGCAGGAACAGTATCTAACCAGACCGTGGTACGCAGCAGCAAAAAAGATGATGATGTTTATGGGTATTATGATTGTCGTGGTGACATCACAGGAAGTTTCTGTAAATTTTGTCTCTCCACTGCTGTCAAAGATATCGCACAACGTTGTCCCAACGGGGTCACGGCCATGATATGGTATGATATATGCATCGTCGGATATTCTAACCAATATTTCCCAGGAAAAGTTACTTTAACCCCATCATGGAATTTCACCGGATCGAAAAATGTCACGGACTCAACTGATCTTGGGAAAGCAGTAAATTACATGAGGAATTTGATAGGCAAAGTGACTAAATTAGCCAACAATCATTGGGCAGTGGGTGAGTTCAATTGGAGTGACAATGAGAAAAGCTATGCTTGGGTGCAGTGTAGTAGAGATATTAGTAAGGATGGGTGCAAACAGTGTTTGGAGACTATGTTGAATAAAGTTCCTAAGTGCTGTGGAACAAAGGTAAAATGGGCAGTGATGTGTCCTAGTTGTGGGATGGAGATTGACAATAATAAGTTCTATCAACTGCCAACAGGATCTTCTTCTCCATTGCCAAATCGAGGCAAGCAAGGGGCAAGTTATACCAAAACCTTGATCATCATCTTAGTAAGTGTACTGGTCGCAGTAGCTCTACTAAGTTATTGTGTCTACTACTACTACTGGAGAAATAATCGGTTAAGTAAAGGTCGATCACTGTTAAGGACCATTACACCTATATCTTTCCGTGATAACGTTCAAAGAGAGGATTCATTACATGGAGACCTTCCTACAATCCCTTTAACTGTAATTCAACAGAGCACCGGTAACTTTTCAGAGTCATATAAACTCGGAGAAGGTGGGTTTGGCCCAGTTTACAAGGGTACTTTACCAGATGGCACAGAAGTTGCTGCCAAAAGGCTTTCAGAAACATCAGGTCAAGGTTCGGGGGAGTTCAAAAATGAAGTAATATTCATAGCTAAACTGCAACACAGAAACCTCGTGAAACTCTTGGGTTGCTGCTTTGAGGGAGATGAAAAAATACTAGTATATGAGTACATGCGAAATTCAAGCCTTGACTTTCACCTTTTCAATAAGGAAAAACAAAAGCATCTATGTTGGAAATTACGACTAAGCATTATCAATGGAATTGCAAAAGGACTGCTTTACCTTCATGAGGACTCTCGACTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAAAGACCAATGTCCGACAAAAACAAAAAGAGTTATTGGCACCTATGGATACATGGCTCCAGAATACGCCATGGCTGGGTTATTTTCAGTGAAATCCGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAGATAATTTATGGTAAAAGAAATGGCGAATTCGTTCTTTCAGAACATATGCAAAGTCTTCTATTATATACATGGAAACTCTGGTGTGACGGAAAAAGTTTAGAATTAATCGATCCTTTCCTCAAAAAATCATACATTGAAAGCGAAGTCTTGAAGTGCATACACATTGGTTTATTGTGCGTTCAAGAAGATGCAGCTGATCGACCAACCATGTCCACCGTTGTTCGCATGCTAGGAAGTGACACAGTAGACCTTCCAAAACCCACGCAACCAGCATTTTCAATTGGTAGAAAGTCCAAGAATGAAGATCAAACTTCAAAAAATTCTAAGGATAATTCCGTCGATGAAGAAACCCTAACTATTGTTTCACCTAGATAG	1977	0.3905	MTCTTRFLSFIILHIFFLTLTNAQSPFYVISFCQNSTEETDITSYRSNVNNVLSWINSNSAAGTVSNQTVVRSSKKDDDVYGYYDCRGDITGSFCKFCLSTAVKDIAQRCPNGVTAMIWYDICIVGYSNQYFPGKVTLTPSWNFTGSKNVTDSTDLGKAVNYMRNLIGKVTKLANNHWAVGEFNWSDNEKSYAWVQCSRDISKDGCKQCLETMLNKVPKCCGTKVKWAVMCPSCGMEIDNNKFYQLPTGSSSPLPNRGKQGASYTKTLIIILVSVLVAVALLSYCVYYYYWRNNRLSKGRSLLRTITPISFRDNVQREDSLHGDLPTIPLTVIQQSTGNFSESYKLGEGGFGPVYKGTLPDGTEVAAKRLSETSGQGSGEFKNEVIFIAKLQHRNLVKLLGCCFEGDEKILVYEYMRNSSLDFHLFNKEKQKHLCWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARTFEKDQCPTKTKRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIIYGKRNGEFVLSEHMQSLLLYTWKLWCDGKSLELIDPFLKKSYIESEVLKCIHIGLLCVQEDAADRPTMSTVVRMLGSDTVDLPKPTQPAFSIGRKSKNEDQTSKNSKDNSVDEETLTIVSPR	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01553	658	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	307	415	-	-
	Trre15g01553	658	ProSiteProfiles	Protein kinase domain profile.	340	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01553	658	Gene3D	-	27	132	IPR038408	-
	Trre15g01553	658	Gene3D	-	141	243	IPR038408	-
	Trre15g01553	658	CDD	STKc_IRAK	346	611	-	-
	Trre15g01553	658	MobiDBLite	consensus disorder prediction	615	658	-	-
	Trre15g01553	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Trre15g01553	658	Gene3D	Phosphorylase Kinase; domain 1	307	415	-	-
	Trre15g01553	658	ProSiteProfiles	Gnk2-homologous domain profile.	138	243	IPR002902	-
	Trre15g01553	658	ProSiteProfiles	Gnk2-homologous domain profile.	27	132	IPR002902	-
	Trre15g01553	658	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	32	655	-	-
	Trre15g01553	658	FunFam	Liguleless narrow1	416	619	-	-
	Trre15g01553	658	SUPERFAMILY	Protein kinase-like (PK-like)	322	611	IPR011009	-
	Trre15g01553	658	Pfam	Protein tyrosine and serine/threonine kinase	344	611	IPR001245	GO:0004672\|GO:0006468
	Trre15g01553	658	SMART	serkin_6	340	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01553	658	MobiDBLite	consensus disorder prediction	633	647	-	-
	Trre15g01553	658	Pfam	Salt stress response/antifungal	165	239	IPR002902	-
	Trre15g01553	658	Pfam	Salt stress response/antifungal	33	130	IPR002902	-
	Trre15g01553	658	Gene3D	Transferase(Phosphotransferase) domain 1	416	619	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01553	Trre-Chr15	12422332	12425733	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01553	2	658	Receptor kinase-like Gene Family	AT4G05200	39.562	8.80e-173	507

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre15g01553		PK_Tyr_Ser-Thr	2.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01553	-		-	mtr:11406796	1049.65