Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01552 ATGACATGTACTAAAAAGTTTCTAAGCTCCATTCTACTTCATCTATTCCTCTTAACCTTAACAAATGCAGAATCACCATTTTACGTATCAAGTTTTTGCCAGAGTTCAACAGAAACAAACATCGCATCATACCGATCCAACGTTAACAAATTCCTTTTATGGATAAACTCCAACTCAGCCACAGGCACGATAAATAACTATACCTCCATAAGCAGCAACAACAACCACAATGATGATGTTTATGGCTACTATGGTTGTCGTGGTGACATCTTAGGATCTTTCTGTGAATTTTGTCTCAACGCTGCTGTCACAGATATCACTCAACGTTGTCCCAATGGGGTATCGGCTATGGTATGGTATAACATATGCCTCATCGGATATTCTAACCAGAGTTTCCCAGGAAACGTTATTATAACGCCATCATGGAATCTAAAAGGATCCAAAAACGTCAAGGACTCGACTGAACATGGGAAAGCAGAAAGTTACATAAGGAATTTGATAGGCAGAGTGACTACAGAAGCCGATGTTCAATGGGCAATGGGCGAGTTCAATTTGAGAGAGACTGAGAAAAGGTATGGTTGGGTGCAGTGTAGTCCATATATTAGTAAAGATGAATGCAGACAGTGTTTGGAGACTATGTTGGATAAAGTTCCTAAGTGTTGTGGAACAAAGGTAAAATGGGCAGTGGTGTGTCCTAGTTGCGGGATGGAGATTGATGATAATAAGTTCTACCAACTGCAAACAGGATCTCCTTCTCCATTGCCAAATCGAGGCAAACAAAAAGGTGCAAGAAATACCAAATCCTTGATCATCATCTTAGCAAGTGTATTGGTGACAGTAGCTCTACTAATTTGTTGTGTCTACTACTACTGGAGAAAGAATAATAGATTAAGTAAAGGTCGATCGCTGTTGAGGACCATTACTCCCATATCTTTCCGAGATAACGTTCAAAGAGAGGATGCATTAAATGGAGACCTTCCTACAATATCGTTAACTGTAATTCAACAAAGCACTGATAACTTTTCAGAGTCATTTAAATTAGGAGAAGGTGGATTTGGCCCAGTTTACAAGGGTACATTACCAGATGGCACAGAAGTTGCTGTCAAAAGGCTTTCAGAAACATCAGGTAGAGGTTCAGGCGAGTTCAAAAATGAAGTAATATTCATAGCTAAACTGCAACACAGAAACCTCGTGAAACTCTTAGGTTGCTGCATAGAGGGAGATGAAAAAATACTGGTATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACATTTTCAATAAGGAAAAACAAAAGCATCTATGCTGGAAATTACGACTAAGCATTATCAATGGAATTGCAAAAGGACTGCTTTACCTTCATGAGGATTCTAGACTTAGAGTAATCCATCGAGATCTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAAAGACCAATGTCCGACAAAAACAAAAAGAGTTATTGGCACATATGGATACATGGCTCCAGAATATGCAATGGCTGGGTTATTTTCAGTGAAATCCGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATAATTTATGGAAAACGAAATGGCCAATTCGTTCTTTCAGAACATATGCAAAGTCTTCTATTATATACATGGAAACTCTGGTGTGATGGGAAATGCTTAGAATTAATCGATCCTTTCCACCAAAAAACATACGTTGAAAGTGAAGTCTTGAAGTGCATACACATTGGTTTATTGTGCGTTCAAGAAGATGCAGCGGATCGACCAATCATGTCCACTGTTGTTCGCATGCTAGGGAGTGACAGAGTAAACCTTCCAAAACCCAAGCAACCAGCATTTTCAGTTGGGAGAATGTCCAAGAATGAAAATCAAAATTCAAAAAATTCTAAGGATAATTCTGTTGATGAAGAAACCTTAACAATTGTTTCATCTAGATAG 1980 0.3833 MTCTKKFLSSILLHLFLLTLTNAESPFYVSSFCQSSTETNIASYRSNVNKFLLWINSNSATGTINNYTSISSNNNHNDDVYGYYGCRGDILGSFCEFCLNAAVTDITQRCPNGVSAMVWYNICLIGYSNQSFPGNVIITPSWNLKGSKNVKDSTEHGKAESYIRNLIGRVTTEADVQWAMGEFNLRETEKRYGWVQCSPYISKDECRQCLETMLDKVPKCCGTKVKWAVVCPSCGMEIDDNKFYQLQTGSPSPLPNRGKQKGARNTKSLIIILASVLVTVALLICCVYYYWRKNNRLSKGRSLLRTITPISFRDNVQREDALNGDLPTISLTVIQQSTDNFSESFKLGEGGFGPVYKGTLPDGTEVAVKRLSETSGRGSGEFKNEVIFIAKLQHRNLVKLLGCCIEGDEKILVYEYMPNSSLDFHIFNKEKQKHLCWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARTFEKDQCPTKTKRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIIYGKRNGQFVLSEHMQSLLLYTWKLWCDGKCLELIDPFHQKTYVESEVLKCIHIGLLCVQEDAADRPIMSTVVRMLGSDRVNLPKPKQPAFSVGRMSKNENQNSKNSKDNSVDEETLTIVSSR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01552 659 ProSiteProfiles Protein kinase domain profile. 341 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01552 659 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 655 - -
Trre15g01552 659 ProSiteProfiles Gnk2-homologous domain profile. 26 132 IPR002902 -
Trre15g01552 659 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Trre15g01552 659 SMART serkin_6 341 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01552 659 SUPERFAMILY Protein kinase-like (PK-like) 325 612 IPR011009 -
Trre15g01552 659 Gene3D - 143 243 IPR038408 -
Trre15g01552 659 Gene3D - 26 132 IPR038408 -
Trre15g01552 659 ProSiteProfiles Gnk2-homologous domain profile. 138 243 IPR002902 -
Trre15g01552 659 Gene3D Phosphorylase Kinase; domain 1 308 416 - -
Trre15g01552 659 Pfam Protein tyrosine and serine/threonine kinase 346 611 IPR001245 GO:0004672|GO:0006468
Trre15g01552 659 CDD STKc_IRAK 347 612 - -
Trre15g01552 659 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 308 416 - -
Trre15g01552 659 FunFam Liguleless narrow1 417 620 - -
Trre15g01552 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Trre15g01552 659 Pfam Salt stress response/antifungal 33 130 IPR002902 -
Trre15g01552 659 Pfam Salt stress response/antifungal 161 237 IPR002902 -
Trre15g01552 659 MobiDBLite consensus disorder prediction 616 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01552 Trre-Chr15 12415747 12418837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01552 2 659 Receptor kinase-like Gene Family AT4G05200 39.359 1.16e-164 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01552 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01552 - - mtr:11406796 1035.02