LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01551	ATGACATGTATTACAAGGTTCATTAGCTTCATTCTCCTCTTCTTTTTCCTCTTCATGACCCTAACAAATGCACAATCAAAATCACCATTTTACATGCATAGTGTTTGCGAGAACGTAACAGAAAAAACAAACACTTCATACAAATCAAACATTCACAACTTCCTTTCATGGGTAATCACTGATTCTGCCACAGGCAACTTATCTAACCATAACGCCGTAGGCAGTAAGAATAACAGTGATCACGACGATGTTTATGGCTTCTATGAATGTAGGGCTGACATCACAGGAAGTTTCTGTCAATTCTGTATCAATACTGCTGTTGGAGAATTCGCTCAACGTTGTCCTAACGGTGACTCGGCTATGATATGGTATGATTTATGCATCATAGGTTATTCTAACAAGAATAACACAGGAAAAGTTATTGTAGAACCCTCATGGAATGTAACCGGATCCAAACTTGTTAAGGACTCAACAGATCTCGCGAAAGTAGAGACTAGTATTACGAGTTTGATAGAAAAAATGAGTACAGCAGCCACTCATAATTGGGCAACGGGTGAGTTCAATTGGAGCGACACCGAGAAAAGGTATAGTTTGGTGCAGTGTAATAGAGCGCTTAGTAAGGCCGGGTGCAAACAGTGTTTAGAGGCTCTGTTGGATAGAGTTCCTCGATGCTGTGGAACGAAGGTGGGATGGGTAGTTGTGTGTCCTAGTTGTGGGATGAAGATTGATGATTATAACTTCTACCAACAGCAACCAGCATCTCCTTCTCCTATTCCAAATCCAGACAAACAGGAAGATTCAGGTAACAAAAAAACCTTGATCATCATCTTGGTATGTGTACTGGGGGCAGTAGCTCTACTAATTTGTTGCGTCTGCTGCTACCGGAGAAAGAATGGGTTAAGTAAAGGTGGATTACTGTTGAGGACTGCTACTCCTATATCTTTCCGTCATCATGCTCAAAGAGAAGATGCATTGAATGGAGACCTTCCTACAATCCCTTTAACTGTAATTGAACAAATCACGGATAACTTTTCGGAGTTATCTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGTACATTACCAGATGGCACAGAAGTTGCTGTGAAAAGGCTTTCAGAAACATCAGGTCAAGGTTCCGAGGAATTCAAGAATGAAGTAATCTTCATAGCTAAACTGCAACACAGAAACCTCGTGAAACTCTTGGGTTGCTGCATTGAAGGAAATGAAAAAATACTAGTATATGAATACATGTCAAATTCAAGCCTTGACTCTCACCTTTTCGATAAGGAAAAGCATAAGCAACTGGATTGGAAGTTACGACTAAGCATTATCAATGGAATCGCAAAAGGACTCGTATACCTTCATGAGGATTCTCGACTTAGAGTAATCCATAGAGATTTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGACTCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGAAAAAGACCAATGTCAGACAAAAACAAAACGAGTTATTGGCACCTATGGATACATGGCTCCAGAATATGCTATGGCTGGTTTTTTTTCAGTGAAATCAGACGTTTTTAGCTTTGGAGTTCTTTTATTAGAAATAATTTATGGAAAAAGAAATGGCGAATTCTTTCTTTCAGAACATATGCAAAGTCTTCTATTATATACATGGAAACTGTGGTGTGAAGGAAAAAGTTTAGAATTAATCGATCCGTACCACTTAAAAACGTACATTGAAAGTGAAGTCTTGAAGTGTATACATATTGGTTTATTGTGTGTACAAGAAGAAGCAGCGGATCGACCAACAATGTCCACCGTTGTTCGCATGCTAGGAAGTGACACAGTAGACCTTCCAAAACCCAATCAACCAGCATTTTCAGTTGGGAGAATGGCTAAGAGTGAAGATCCAACATCAAAAAATTCTAAGGATAATTATTCTGTTGATGAAGTAACACTAACTATTGTCTCACCTAGATAG	1992	0.3901	MTCITRFISFILLFFFLFMTLTNAQSKSPFYMHSVCENVTEKTNTSYKSNIHNFLSWVITDSATGNLSNHNAVGSKNNSDHDDVYGFYECRADITGSFCQFCINTAVGEFAQRCPNGDSAMIWYDLCIIGYSNKNNTGKVIVEPSWNVTGSKLVKDSTDLAKVETSITSLIEKMSTAATHNWATGEFNWSDTEKRYSLVQCNRALSKAGCKQCLEALLDRVPRCCGTKVGWVVVCPSCGMKIDDYNFYQQQPASPSPIPNPDKQEDSGNKKTLIIILVCVLGAVALLICCVCCYRRKNGLSKGGLLLRTATPISFRHHAQREDALNGDLPTIPLTVIEQITDNFSELSKLGEGGFGPVYKGTLPDGTEVAVKRLSETSGQGSEEFKNEVIFIAKLQHRNLVKLLGCCIEGNEKILVYEYMSNSSLDSHLFDKEKHKQLDWKLRLSIINGIAKGLVYLHEDSRLRVIHRDLKASNVLLDDEMTPKISDFGLARTFEKDQCQTKTKRVIGTYGYMAPEYAMAGFFSVKSDVFSFGVLLLEIIYGKRNGEFFLSEHMQSLLLYTWKLWCEGKSLELIDPYHLKTYIESEVLKCIHIGLLCVQEEAADRPTMSTVVRMLGSDTVDLPKPNQPAFSVGRMAKSEDPTSKNSKDNYSVDEVTLTIVSPR	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01551	663	Pfam	Salt stress response/antifungal	163	244	IPR002902	-
	Trre15g01551	663	Pfam	Salt stress response/antifungal	36	133	IPR002902	-
	Trre15g01551	663	ProSiteProfiles	Protein kinase domain profile.	344	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01551	663	ProSiteProfiles	Gnk2-homologous domain profile.	142	247	IPR002902	-
	Trre15g01551	663	Pfam	Protein tyrosine and serine/threonine kinase	348	615	IPR001245	GO:0004672\|GO:0006468
	Trre15g01551	663	SUPERFAMILY	Protein kinase-like (PK-like)	328	615	IPR011009	-
	Trre15g01551	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	465	477	IPR008271	GO:0004672\|GO:0006468
	Trre15g01551	663	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	309	419	-	-
	Trre15g01551	663	Pfam	Domain of unknown function (DUF3403)	617	663	IPR021820	GO:0004674
	Trre15g01551	663	Gene3D	Phosphorylase Kinase; domain 1	310	419	-	-
	Trre15g01551	663	FunFam	Liguleless narrow1	420	623	-	-
	Trre15g01551	663	MobiDBLite	consensus disorder prediction	622	650	-	-
	Trre15g01551	663	Gene3D	-	29	135	IPR038408	-
	Trre15g01551	663	Gene3D	-	147	247	IPR038408	-
	Trre15g01551	663	SMART	serkin_6	344	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01551	663	ProSiteProfiles	Gnk2-homologous domain profile.	29	136	IPR002902	-
	Trre15g01551	663	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	41	662	-	-
	Trre15g01551	663	Gene3D	Transferase(Phosphotransferase) domain 1	420	623	-	-
	Trre15g01551	663	CDD	STKc_IRAK	350	615	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01551	Trre-Chr15	12410159	12413120	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01551	7	663	Receptor kinase-like Gene Family	AT4G05200	41.954	1.34e-180	528

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre15g01551		PK_Tyr_Ser-Thr	1.2e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01551	-		-	mtr:11406796	1047.34