LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01540	ATGACATATATGAAATTTCTTAGTTTCATGCTCCTCCTTCTTTTCCTTGTTTTCCACTTCACACCAACAAGTGCACAAGTTCCAATTTACTTGTACAATTTTTGTGAAAACTCAACAGCAAAATCTCTAACCACTTCATTCAAATCGAACGTAAACAACTTTGTTTCATGGATAGCTTCTGATTCTTCCAAAGGAACAACATTTAACCACACCATCATAGGCAGCAGAAGCAGTGATGATGTTTATGGAAACTATGATTGCCGGTTTGATATTTCGGAAAGTTTCTGTCAATTCTGTGTTAGCACTGCTGCAAGAGATCTTGTTCAACATTGTCCAAACAGCGTCACGTCTGTTATATTTTATGATGTATGTATTATCCGTTACTCTAACGAGAATTTCTTTGGAAAAGTTTCGATAACACCAACATGGAATGTTACTGGAACTAAAAAAATTAAGGACTCAAGTGATCTTGCAAAAGTAGAGGGTTATATAAGTGTTTTGATACGAAAAGCGACTATAGAGACTAACCAATCATGGGCAATGGGCGAGTTTAATTTGAGTAATACGGAGAAAAGATATGGTTTAGCTCAGTGTGGTAGAGACGTCGATAATGAAGGGTGTAGACAGTGTTTGGAGGCTATGTTGGACTTAGTTCCCAAGTGTTGTGGGAATAAGGTGTCATGGGAAGTTGTGGCTCCAAGTTGTGGGATCAAATTTGATGATCAAAAGTTCTTTATGTTAAATGCCGAAACAGGATCATCTAAACCAAATCCAGCCAAAAGTAACAAAAAAACGTTGGTCATCGCCTTAGTAAGTGCGCTCGTGGCAGTAGCCCTTCTATGTTGCTGTATCTACTACTACTGGAGAAAGAATGGGTTGAGTAAAGGTGGATCTCTGTCGAGGAGCACTACTCCTATAGCTTATAATGATAGTGTTCAAAGAGAGGATAAATTGAATGGAGACCTTCCTATGATCCCTTTTACTATAATTCAACAAGCAACTAATTACTTTTCACTATCATATAAGTTAGGAGAAGGTGGATTTGGTCCTGTTTATAAGGGTACTTTACCTGATGGGACAGAAATTGCAGTCAAAAGACTTGCACATACGTCTGATCAAGGCTCCGAGGAGTTCAAGAATGAAGTAATTTTCATAGCTAAACTGCAACATAGGAATCTTGTGAAACTATTAGGTTGCTGCATTGAAGACGGCGAAAAGATACTAGTATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAATGAAGAAAAAAGTAAGCAACTAGATTGGACATTACGACTAAGTATTATCAATGGAATCGCAAGAGGATTGTTATACCTTCACCAAGATTCTCGACTTAGAGTTATCCATAGAGATATGAAAGCCAGCAATGTTCTTCTTGATGATGAAATGATTCCAAAAATATCAGATTTTGGATTGGCGAGGACATTCGAAAAAGGCCAAAGTCAGACGAAAACAAGAAAAGTTATTGGCACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGATTATTTTCGGTAAAATCTGATGTATTCAGCTTTGGAGTTCTTTTATTAGAAATCGTTTATGGAAAAAGGAATGGTGAAGTCTTTATTTCAGAACATAAGCAAGGTCTTCTATTATATACTTGGAAACTTTGGTGCGAAGGGAAAAATTTGGAATCAATTGATCCGATCCTCAAAGAATCATACATTGAAAGTGAGGTTATGAAGTGCATACACATTGGTTTATTGTGTGTACAACAAGATGCTGCAGATCGACCAACCATGTCCACCGTTGTTTTGATGTTAGGCAGTGACACAATGCCTCTTCCGAAACCCAAGCAACCGGCATTTTCAGTTGGAAGAATGTCCGCAGAAGAAGATCCAAGTTCAAATAGTTCTAAGTATACTTATGTTGATGAAGTACCTATAACTATTGTTTCAGCTAGATAG	1968	0.376	MTYMKFLSFMLLLLFLVFHFTPTSAQVPIYLYNFCENSTAKSLTTSFKSNVNNFVSWIASDSSKGTTFNHTIIGSRSSDDVYGNYDCRFDISESFCQFCVSTAARDLVQHCPNSVTSVIFYDVCIIRYSNENFFGKVSITPTWNVTGTKKIKDSSDLAKVEGYISVLIRKATIETNQSWAMGEFNLSNTEKRYGLAQCGRDVDNEGCRQCLEAMLDLVPKCCGNKVSWEVVAPSCGIKFDDQKFFMLNAETGSSKPNPAKSNKKTLVIALVSALVAVALLCCCIYYYWRKNGLSKGGSLSRSTTPIAYNDSVQREDKLNGDLPMIPFTIIQQATNYFSLSYKLGEGGFGPVYKGTLPDGTEIAVKRLAHTSDQGSEEFKNEVIFIAKLQHRNLVKLLGCCIEDGEKILVYEYMPNSSLDFHLFNEEKSKQLDWTLRLSIINGIARGLLYLHQDSRLRVIHRDMKASNVLLDDEMIPKISDFGLARTFEKGQSQTKTRKVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIVYGKRNGEVFISEHKQGLLLYTWKLWCEGKNLESIDPILKESYIESEVMKCIHIGLLCVQQDAADRPTMSTVVLMLGSDTMPLPKPKQPAFSVGRMSAEEDPSSNSSKYTYVDEVPITIVSAR	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01540	655	ProSiteProfiles	Gnk2-homologous domain profile.	139	244	IPR002902	-
	Trre15g01540	655	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	302	412	-	-
	Trre15g01540	655	Pfam	Salt stress response/antifungal	35	130	IPR002902	-
	Trre15g01540	655	Pfam	Salt stress response/antifungal	184	241	IPR002902	-
	Trre15g01540	655	Gene3D	-	142	244	IPR038408	-
	Trre15g01540	655	Gene3D	-	28	133	IPR038408	-
	Trre15g01540	655	Gene3D	Phosphorylase Kinase; domain 1	301	412	-	-
	Trre15g01540	655	ProSiteProfiles	Protein kinase domain profile.	337	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01540	655	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	37	651	-	-
	Trre15g01540	655	SMART	serkin_6	337	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01540	655	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	413	616	-	-
	Trre15g01540	655	Gene3D	Transferase(Phosphotransferase) domain 1	413	614	-	-
	Trre15g01540	655	MobiDBLite	consensus disorder prediction	619	639	-	-
	Trre15g01540	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Trre15g01540	655	Pfam	Protein tyrosine and serine/threonine kinase	339	606	IPR001245	GO:0004672\|GO:0006468
	Trre15g01540	655	SUPERFAMILY	Protein kinase-like (PK-like)	321	630	IPR011009	-
	Trre15g01540	655	CDD	STKc_IRAK	343	608	-	-
	Trre15g01540	655	ProSiteProfiles	Gnk2-homologous domain profile.	29	133	IPR002902	-
	Trre15g01540	655	Pfam	Domain of unknown function (DUF3403)	610	655	IPR021820	GO:0004674

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01540	Trre-Chr15	12205721	12208788	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01540	6	655	Receptor kinase-like Gene Family	AT4G05200	39.092	4.45e-169	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre15g01540		PK_Tyr_Ser-Thr	8.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01540	-		-	mtr:11406796	875.544