Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01539 ATGACAAATATGAAACTTCTTAGCTTCATGCTCCTCCTTCTTTTCCTTGTCTTCCACTTCACACCAACAAGTGCACAAGTTCCAATTTACTTGTACAACTTTTGTGAAAACTCAACAGAAAAATCTCTAAGCACTTCATACAAATCAAACGTAAACGACTTTGTTTCATGGATAGCTTCTGATTCTTCCAAAGGAACAAAATTTAACCACACCATCATAGGAAGCAGCAGCAGTGACACTGGTGATGATGTTTATGGAAACTACGATTGCCGGTTTGATATTCCAGAAAGTTTATGTCAGTTCTGTGTCAAAACTGCTGCAAGAGATCTTGTTCAACATTGTCCAAACAGCGTAACGTCTGTTATATTTTATGATGTATGTATTATCCGTTACTCTAACGAGAATTTCTTTGGAAAAGTTTCGATAACACCAACATGGAATGCGACTGGAACAAAAAATATTAAGGACTCGAGTGATCTTGCAAAAGTAGAGGGTTACATAAGGGTTTTGATACGAAAAGCGACTATAGAGACTAACAATTCATGGGCAATGGATGAGTTTAATTTGAGTAATACGGAGAAAAGGTACGGTTTAGCTCAGTGTGGTAGAGACATCGATACTGAAGGATGCAGACAGTGTTTGGAGGCTCTGTTGGACTTAGTTCCCAAGTGTTGTGGGAATAAGGTGTCATGGGAAGTTGTGGCTCCAAGTTGTGGGCTCAGATTTGATAATCAAAAGATCAGTTTGTCATATGGGCAAACAGGATCATCTTCTAAGCAAAATCCAGCCAATCAAAAAGATTCAAGTAACAAAAAAACCTTGGTCATCGCCTTAGTAAGTGCGCTCGTGGCAGTAGCCCTTCTATGTTGCTGTATCTACTACTACTGGAGAAAGAATGGGTTGAGTAAAGGTGGATTTCTGTCGAGGAACACTAAAACTATAGCTTATAATGATAATGTCGAAAGAGATGATACATTGAATGGAGACCTTCCTATGATCCCTTTTACTGTAATTCAACAAAGCACAGATAACTTTTCAATATCATCTAAGTTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTACTTTACCTGATGGGACAGAAATTGCAGTCAAAAGACTTGCAGATACGTCTAATCAAGGTTCCGAGGAATTCAAGAATGAAGTAATTTTCATAGCTAAACTGCAACATAGGAATCTTGTGAAACTACTAGGTTGCTGCATTGAAGACGGCGAAAAGATACTAGTATATGAGTATATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAATGAAGAAAAAAGTAAGCAACTAGATTGGACATTACGACTAAGTATTATCAATGGAATCGCAAGAGGATTGTTATACCTTCACCAAGATTCTCGACTTAGAGTTATCCATAGAGATTTGAAAGCCAGCAATGTCCTTCTTGATGATGAAATGATTCCAAAAATATCAGATTTTGGATTGGCTAGGACATTCGAAAAAGGCCAATGTCAGACAAAAACAAGAAGAGTTATTGGCACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGATTATTTTCAGTAAAATCTGATGTATTCAGCTTTGGAGTTCTTTTATTAGAAATCGTTTATGGAAAAAGGAATGGTGAAGTCTTTATTTCAGAAGATAGGCAAGGTCTTCTATTACATACTTGGAAACTTTGGTGTGAAGGGAAAAGTTTGGAATCAATTGATCCGATCCACAAAGAATCATACATTGAAAGTGCGGTTATGAAGTGCATAAACATTGGTTTATTGTGTGTACAACAAGATGCTGCAGATCGACCAACCATGTCCACCGTTGTTCTCATGCTAGGCAGTGACACAATGCCCCTTCCAAAACCCAAGCAACCGGCATTTTCAGTCGGAAGAATGTCCAAAGAAGATCCAAGTGCAAATAGTTATAAGGATAATTCTGTTGATGAAGTAGCTATAACTATTGTTTCAGCTAGATAG 1989 0.3801 MTNMKLLSFMLLLLFLVFHFTPTSAQVPIYLYNFCENSTEKSLSTSYKSNVNDFVSWIASDSSKGTKFNHTIIGSSSSDTGDDVYGNYDCRFDIPESLCQFCVKTAARDLVQHCPNSVTSVIFYDVCIIRYSNENFFGKVSITPTWNATGTKNIKDSSDLAKVEGYIRVLIRKATIETNNSWAMDEFNLSNTEKRYGLAQCGRDIDTEGCRQCLEALLDLVPKCCGNKVSWEVVAPSCGLRFDNQKISLSYGQTGSSSKQNPANQKDSSNKKTLVIALVSALVAVALLCCCIYYYWRKNGLSKGGFLSRNTKTIAYNDNVERDDTLNGDLPMIPFTVIQQSTDNFSISSKLGEGGFGPVYKGTLPDGTEIAVKRLADTSNQGSEEFKNEVIFIAKLQHRNLVKLLGCCIEDGEKILVYEYMPNSSLDFHLFNEEKSKQLDWTLRLSIINGIARGLLYLHQDSRLRVIHRDLKASNVLLDDEMIPKISDFGLARTFEKGQCQTKTRRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIVYGKRNGEVFISEDRQGLLLHTWKLWCEGKSLESIDPIHKESYIESAVMKCINIGLLCVQQDAADRPTMSTVVLMLGSDTMPLPKPKQPAFSVGRMSKEDPSANSYKDNSVDEVAITIVSAR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01539 662 Pfam Salt stress response/antifungal 35 133 IPR002902 -
Trre15g01539 662 Pfam Salt stress response/antifungal 186 245 IPR002902 -
Trre15g01539 662 SUPERFAMILY Protein kinase-like (PK-like) 330 642 IPR011009 -
Trre15g01539 662 SMART serkin_6 345 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01539 662 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 660 - -
Trre15g01539 662 CDD STKc_IRAK 351 616 - -
Trre15g01539 662 Gene3D Phosphorylase Kinase; domain 1 307 420 - -
Trre15g01539 662 ProSiteProfiles Protein kinase domain profile. 345 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01539 662 Gene3D - 144 246 IPR038408 -
Trre15g01539 662 Gene3D - 28 136 IPR038408 -
Trre15g01539 662 Pfam Domain of unknown function (DUF3403) 618 662 IPR021820 GO:0004674
Trre15g01539 662 ProSiteProfiles Gnk2-homologous domain profile. 142 247 IPR002902 -
Trre15g01539 662 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672|GO:0006468
Trre15g01539 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 421 624 - -
Trre15g01539 662 ProSiteProfiles Gnk2-homologous domain profile. 29 136 IPR002902 -
Trre15g01539 662 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
Trre15g01539 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Trre15g01539 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 309 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01539 Trre-Chr15 12201244 12204402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01539 14 662 Receptor kinase-like Gene Family AT4G05200 40.560 1.15e-166 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01539 PK_Tyr_Ser-Thr 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01539 - - mtr:11406796 888.256