Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01538 ATGGAAAGAACACAACTAAATTTGACATCAATATTTTTTGCTTTGTTACTATATCTAAGCTTCAAACAAATCATTACAAAAGCTCAATCACCAAGATATGTGGGAGATGACTGTAATTACTCAAAACAACAGCCTCTTAGCAATGCATACCAAAACAATCTCAATAGCATCCTCTCATATCTATCCGATGATTCAGCCACAAGCAAAGGTTATAACTACACCAGAATAGGTGACAACACGACCAAAGGTGATGCTGTGTATGGTCTCTATGATTGTCGTGGCGATGTGGTTGGATACTTTTGTGAATTTTGTGTCTCTTCTGCTGCCAGAGAAGTTCTTGGTCGCTGTCCGAATAGAGTCGCTGCTACTATATTTTATAGCTTCTGCATTTTTAGGTACTCAAATGAGAACTTCTTTGGGAAAGTCACAACAGACCCTTCATGGAAACATTTAGGAACCAAAAACGTCTCTAGTGCGATAGAGATTCAGAAAGGCGATGATTTTATGAAAGGTTTGATCAGAAAAGCAACTATTGAGACCAACCAATTGTACTATATGGATGGTTTCAATTTAAGTTCTATGGAGAGTAGATACGGACTGGTTCAATGCAGTAGAGATCTTTCAAATGAAAGGTGCAGACAGTGTTTGGAGTTTATGTTGGCAAAGGTTCGCACATGTTGCGAACATAAGTTGGGATGGCAGGTTTCATCAGCTAGTTGTCTGATTAGGTATGATGATTATAAGTTCTATCTTCGCCAAGATCAATCACCTTCGGTAGTTGTGCCTGATCCACAAGCAGAAAACAAGAGTACTAGTAAGTCAAGAAAGTTGATCATTGGCTTTAGTGTTCTGGGTGTAGTAATTCTACTATGTTCAACTATATATTGCTTATGGTACAAGGAAAGAGTTAGAAAAGATTGGTTGACACCTGCTTATGAGGAAACACTTAATGCAGACCTGCCTACAATTCCATTGATCACAATTCAACATTGTACCGATAACTTTTCAGAAACATCTAAACTAGGGGAAGGTGGATTTGGATCTGTTTACAAGGGTATTCTGCCAGATGGAAGACAAATAGCAGTAAAAAGGCTGTCAAGAAATTCAGGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAATCTTGTAAGACTTTTGGCATGCTGCTTGGAAGGAAATGAAAAGCTACTTGTGTATGAGTTTATGCCGAATGCAAGTCTCGACTTTCACCTGTTTGATGATGAAAAAAGAAAGGAACTCAATTGGAAACTAAGTTTAAGCATTATCAATGGAATAGCAAAAGGTCTATTGTACCTCCACGAGGACTCTAGACTAAGGGTAATTCATAGAGATCTTAAAGCTAGTAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGAATGGCAAGGGCATTTGAAATAGGTCAGAACCAGGCGAATACAAGACGAATAATGGGCACCTATGGATACATGGCACCAGAGTACGCAATGGAAGGAGTGTTTTCTGTGAAATCTGATGTATTCAGCTTTGGAGTACTAGTTTTAGAAATCATTAGCGGGAAAAAGAATACCGGATTCTATCTGTCAGAACATGGTCAAAGTCTTCTTTTATTTACATGGAAAAAATGGTGTGAAGGAAACTCTTTGGATATTATGCATTCGGTACTTGCAAAAACCTGTATAGACAATGAAGTTGTGAGGTGCATAAACATTGGCCTATTGTGTGTTCAAGAAGACGCGGCAGATAGACCAACCATGTCAACTGTTGTTGTAATGTTGGCTAGTGACACAATGGCCCTTCCGAAACCGAAACAACCTGCATTTTCAATTGGAAGAATGACCTGTGATGATAATTCTACCTCAAAAAGTTCCAAGACTCCTTCGATTAATGATGTAACAGTCTCAAATATTTTACCGAGGTAA 1962 0.3818 MERTQLNLTSIFFALLLYLSFKQIITKAQSPRYVGDDCNYSKQQPLSNAYQNNLNSILSYLSDDSATSKGYNYTRIGDNTTKGDAVYGLYDCRGDVVGYFCEFCVSSAAREVLGRCPNRVAATIFYSFCIFRYSNENFFGKVTTDPSWKHLGTKNVSSAIEIQKGDDFMKGLIRKATIETNQLYYMDGFNLSSMESRYGLVQCSRDLSNERCRQCLEFMLAKVRTCCEHKLGWQVSSASCLIRYDDYKFYLRQDQSPSVVVPDPQAENKSTSKSRKLIIGFSVLGVVILLCSTIYCLWYKERVRKDWLTPAYEETLNADLPTIPLITIQHCTDNFSETSKLGEGGFGSVYKGILPDGRQIAVKRLSRNSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEGNEKLLVYEFMPNASLDFHLFDDEKRKELNWKLSLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGMARAFEIGQNQANTRRIMGTYGYMAPEYAMEGVFSVKSDVFSFGVLVLEIISGKKNTGFYLSEHGQSLLLFTWKKWCEGNSLDIMHSVLAKTCIDNEVVRCINIGLLCVQEDAADRPTMSTVVVMLASDTMALPKPKQPAFSIGRMTCDDNSTSKSSKTPSINDVTVSNILPR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01538 653 FunFam Cysteine-rich receptor-like protein kinase 10 300 410 - -
Trre15g01538 653 Gene3D Phosphorylase Kinase; domain 1 299 410 - -
Trre15g01538 653 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Trre15g01538 653 FunFam Cysteine-rich receptor-like protein kinase 10 147 249 - -
Trre15g01538 653 SMART serkin_6 335 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01538 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre15g01538 653 FunFam Cysteine-rich receptor-like protein kinase 28 34 137 - -
Trre15g01538 653 Pfam Salt stress response/antifungal 193 247 IPR002902 -
Trre15g01538 653 Pfam Salt stress response/antifungal 38 135 IPR002902 -
Trre15g01538 653 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01538 653 Gene3D Transferase(Phosphotransferase) domain 1 411 616 - -
Trre15g01538 653 FunFam Liguleless narrow1 411 614 - -
Trre15g01538 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 649 - -
Trre15g01538 653 CDD STKc_IRAK 341 606 - -
Trre15g01538 653 Pfam Protein tyrosine and serine/threonine kinase 338 605 IPR001245 GO:0004672|GO:0006468
Trre15g01538 653 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Trre15g01538 653 Gene3D - 32 138 IPR038408 -
Trre15g01538 653 Gene3D - 150 249 IPR038408 -
Trre15g01538 653 Pfam Domain of unknown function (DUF3403) 608 653 IPR021820 GO:0004674
Trre15g01538 653 SUPERFAMILY Protein kinase-like (PK-like) 321 639 IPR011009 -
Trre15g01538 653 ProSiteProfiles Gnk2-homologous domain profile. 144 249 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01538 Trre-Chr15 12196331 12199422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01538 12 653 Receptor kinase-like Gene Family AT4G05200 40.000 9.67e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01538 PK_Tyr_Ser-Thr 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01538 - - cam:101497251 1008.82