Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01536 ATGACTGTGATTACTCAACCGAACAGCCTCTTAGCAATGCATACCAAAAAAAATCTCAATACCATCATCTCATATCTATCAGCTGATGCAGCCGCAAGCAAAGGTTATAACTACACCAGCATAGGGGACAACACAACCAAAGGAGATACAGTGTATGGTCTCTATGATTGCCGCGGTGATGTGGTTGGAGACTTTTGTCAACTTTGTGTCTCTGCTGCTGCCAGAGAAGTTCTTGACCATTGCCCCAATAGAGGCTCTGCTACTATATTTTATAGCTCCTGCATATTTAGGTACTCAAGTCACAACTTCTTTGGGAAAGTCACAACATACCCTTATTGGATTCATTTTGGAACCAAAAAAGTCTCTAATGCAATAGAGATTCCGAAAGGTGAAGATTTGATGAAACGTTTGATTAGAAAAGCAACTAATGAGACCAACCAATTGTACTATATGGATGGTTTCAATTTGAGTTCTACTGAGAGTAGGTATGGACTGGTTCAATGCAGTAGAGATCTTACAAATGAACGGTGCAGACAGTGTTTGCAGTCTATGTTAGCAACGGTTAACATATGTTGTAAACGTAAGTTGGGGTGGCAGGTTTCATCTGCTAGTTGTATGATTAGGTATGATGATCATATGTTCTATCTTCTCCAGAGTCAATCACCTTCGGTACTTGTGCCGGAACCACAAACAGCAAACAAGAAGGGTACTAGTAAATCAAGAAAGTTGATCATTGGCTTTACTGTGCTGGGGTCAGTAATTCTACTATGTTTAACTATATATTGCACCTCGTACAAGACTAGAGTTAGAAAAGATTGGCTGACACCTGCATATGAGGAAACACTTAATGCAGACCTGCCTACAATTCCATTGATCACAATTCAACATTGTACTGATAACTTTTCAGAAACATCCAAGTTAGGAGAAGGTGGATTTGGCTCAGTTTATAAGGGAATTCTGCCAGATGGAAGACAAATAGCAGTAAAAAGGCTGTCAAGAAATTCAGGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCATGGAAGGAAATGAAAAGTTACTTGTGTATGAGTTTATGATGAATGCAAGTCTCGACTTTCACCTGTTTGATGATGAAAAAAGAATGGAACTCAATTGGAAACTAAGTTTAAGCATTATCAATGGAATTGCAAAAGGGCTTTTATACCTCCATGAGGACTCTAGACTAAGGGTAATTCATAGAGATCTCAAAGCCAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGGTTGGCAAGGGCATTTGAAATAGGCCAAAACCAAGCAAATACAAGACGAATAATGGGCACCTATGGATATATGGCACCAGAATATGCAATGGAAGGAGTATTTTCCGTGAAATCTGATGTATTCGGCTTTGGAGTACTAGTTTTAGAAATCATTAGTGGGAAAAAGAATACTGGATTCTATATGTCAGAACATGGTCAAAGTCTTCTTTTATATACATGGAAAAAATGGTGTGAAGGAAACTGTTTGGACACTATGCATTCGGTACTTGCAAAGACCTGTATAGACAATGAAGTCGTGAGGTGCATAAACATTGGTCTATTGTGTGTTCAAGAAGATGCAGCAGACAGACCAACCATGTCAACTGTTGTTGTAATGTTAGCAAGTGACACAATGACCCTTCCAAAACCCAAACAACCTGCATTTTCAATTGGAAGAATGACCTCCAAAACTCTGTCCATTAATGATGTAACTATCTCAAACATTTTACCAAGGTAA 1833 0.3863 MTVITQPNSLLAMHTKKNLNTIISYLSADAAASKGYNYTSIGDNTTKGDTVYGLYDCRGDVVGDFCQLCVSAAAREVLDHCPNRGSATIFYSSCIFRYSSHNFFGKVTTYPYWIHFGTKKVSNAIEIPKGEDLMKRLIRKATNETNQLYYMDGFNLSSTESRYGLVQCSRDLTNERCRQCLQSMLATVNICCKRKLGWQVSSASCMIRYDDHMFYLLQSQSPSVLVPEPQTANKKGTSKSRKLIIGFTVLGSVILLCLTIYCTSYKTRVRKDWLTPAYEETLNADLPTIPLITIQHCTDNFSETSKLGEGGFGSVYKGILPDGRQIAVKRLSRNSGQGSEEFKNEVMFIAKLQHRNLVRLLACCMEGNEKLLVYEFMMNASLDFHLFDDEKRMELNWKLSLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARAFEIGQNQANTRRIMGTYGYMAPEYAMEGVFSVKSDVFGFGVLVLEIISGKKNTGFYMSEHGQSLLLYTWKKWCEGNCLDTMHSVLAKTCIDNEVVRCINIGLLCVQEDAADRPTMSTVVVMLASDTMTLPKPKQPAFSIGRMTSKTLSINDVTISNILPR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01536 610 FunFam Cysteine-rich receptor-like protein kinase 10 112 214 - -
Trre15g01536 610 ProSiteProfiles Gnk2-homologous domain profile. 109 214 IPR002902 -
Trre15g01536 610 CDD STKc_IRAK 307 572 - -
Trre15g01536 610 Pfam Salt stress response/antifungal 16 100 IPR002902 -
Trre15g01536 610 Pfam Salt stress response/antifungal 132 211 IPR002902 -
Trre15g01536 610 FunFam cysteine-rich receptor-like protein kinase 10 377 579 - -
Trre15g01536 610 Pfam Protein tyrosine and serine/threonine kinase 304 571 IPR001245 GO:0004672|GO:0006468
Trre15g01536 610 SMART serkin_6 301 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01536 610 Gene3D Transferase(Phosphotransferase) domain 1 377 583 - -
Trre15g01536 610 ProSiteProfiles Protein kinase domain profile. 301 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01536 610 ProSiteProfiles Gnk2-homologous domain profile. 1 103 IPR002902 -
Trre15g01536 610 SUPERFAMILY Protein kinase-like (PK-like) 280 572 IPR011009 -
Trre15g01536 610 Gene3D Phosphorylase Kinase; domain 1 263 376 - -
Trre15g01536 610 Gene3D - 5 103 IPR038408 -
Trre15g01536 610 Gene3D - 127 214 IPR038408 -
Trre15g01536 610 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 266 376 - -
Trre15g01536 610 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 131 605 - -
Trre15g01536 610 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Trre15g01536 610 Pfam Domain of unknown function (DUF3403) 574 610 IPR021820 GO:0004674
Trre15g01536 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01536 Trre-Chr15 12184372 12186986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01536 18 610 Receptor kinase-like Gene Family AT4G05200 42.902 1.35e-165 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01536 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01536 - - cam:101497251 891.723