Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01532 ATGATGAATCAAGTGGTTCGAGGTTTGAATGTTAGAGGCAGTACTACTATGATGCAGCGTTCAACATTTGTTGATGATGTTTTGATCCTTGATTCTTTTGTCGGAAACAGCAACATGATTTCTTCTTCACTATCTACAACAACAACATCAAGAAGAGTTGGAGGAGTGAATCCTCCTTCATTCATGGTGAACAATCATGATCATGTCCCTGTTTCCAATGTTATGCCACCATGGTTGATGCTAGATCAAGCCATTGTCTTTGATTCTAACTCTATCGCCGCCAATCTGGGTCACCGCCGCAACCATAACCCAAATGTTACTAGAGATTCTCGAGTTAATAATCGTGTCAATCATCAAAATTTTCAACAACTATTCATGAACATTGATGATGAGTCAACAACAATAGGGTCTTGTTCTTCAAAATCTGATTTAATGTGTTGCATATGTCTTACAGAGTTGTCTACCGGTTCCTCGGCCGCAGTTCGGATGCCTCAACATTGTTGTTCCCATGTATTTCACAGTGATTGCATTCAAGAATGGCTAAATGTTAACATGACATGTCCTCTATGTCGCCGCGATGTTTAA 585 0.3983 MMNQVVRGLNVRGSTTMMQRSTFVDDVLILDSFVGNSNMISSSLSTTTTSRRVGGVNPPSFMVNNHDHVPVSNVMPPWLMLDQAIVFDSNSIAANLGHRRNHNPNVTRDSRVNNRVNHQNFQQLFMNIDDESTTIGSCSSKSDLMCCICLTELSTGSSAAVRMPQHCCSHVFHSDCIQEWLNVNMTCPLCRRDV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01532 194 SMART ring_2 146 190 IPR001841 -
Trre15g01532 194 ProSiteProfiles Zinc finger RING-type profile. 146 191 IPR001841 -
Trre15g01532 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 194 IPR013083 -
Trre15g01532 194 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 68 192 - -
Trre15g01532 194 Pfam Ring finger domain 145 191 IPR001841 -
Trre15g01532 194 SUPERFAMILY RING/U-box 140 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01532 Trre-Chr15 12165150 12165734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01532 135 194 C3H Transcription Factor Family AT1G14200 46.667 9.51e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01532 - - tpra:123904894 97.4413