Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01514 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAATGTCAACCTGAATGTGCATTTGCACCTTATTTTCCACCTGATCAACCACAAAAATTTGCAAATGTTCATAGAATTTTTGGAGCAAGTAATGTTACAAAACTTCTTAATGATTTACACCCTCACCAACGTGAAGATGCAGTTAATTCACTTGCTTATGAAGCCGAAATGAGACTTCGCGATCCGGTTTACGGATGTGTAGGTGTAATTTCTCTCCTTCAACATCAACTTCGTCAACTTCAAATGGATCTTTATTGCGCTAAATCCGAACTCTCGAGGTACCAAAATTTGAGTATCGCAGCTACTGCCGGTCATGGACTCATAGCCGGCTTGACAGGTGAATCAGTCGCGGCCGCGACTAATTACCACCACACGCAGAACGCTGCTGGTGGTGGTAATAATAACAGTAACGGCCGTGACCGTGACCATCATTATCATCATCAATTTTTTCCAAGGGATCAACATCAACATAATTTGGTTAGAAATTTTGATGCTGGAATTGGGAACAACTATGATGCTAGTCTCTTGGCTATGAATATATCTGCCAGCTTAGGTCAGATAAATCAGCTTCAACACCATAGTGCTGCCGGCGGTGGTGGTGACGACCGCCGTACTGTTAACCGCTCCTAG 678 0.4351 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSIAATAGHGLIAGLTGESVAAATNYHHTQNAAGGGNNNSNGRDRDHHYHHQFFPRDQHQHNLVRNFDAGIGNNYDASLLAMNISASLGQINQLQHHSAAGGGGDDRRTVNRS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01514 225 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Trre15g01514 225 MobiDBLite consensus disorder prediction 141 160 - -
Trre15g01514 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 149 - -
Trre15g01514 225 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01514 Trre-Chr15 11901274 11901951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01514 2 225 AS2 family AT1G65620 62.054 6.74e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g01514 LOB 3.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01514 - - mtr:25501092 414.075