Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g01514 | ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAATGTCAACCTGAATGTGCATTTGCACCTTATTTTCCACCTGATCAACCACAAAAATTTGCAAATGTTCATAGAATTTTTGGAGCAAGTAATGTTACAAAACTTCTTAATGATTTACACCCTCACCAACGTGAAGATGCAGTTAATTCACTTGCTTATGAAGCCGAAATGAGACTTCGCGATCCGGTTTACGGATGTGTAGGTGTAATTTCTCTCCTTCAACATCAACTTCGTCAACTTCAAATGGATCTTTATTGCGCTAAATCCGAACTCTCGAGGTACCAAAATTTGAGTATCGCAGCTACTGCCGGTCATGGACTCATAGCCGGCTTGACAGGTGAATCAGTCGCGGCCGCGACTAATTACCACCACACGCAGAACGCTGCTGGTGGTGGTAATAATAACAGTAACGGCCGTGACCGTGACCATCATTATCATCATCAATTTTTTCCAAGGGATCAACATCAACATAATTTGGTTAGAAATTTTGATGCTGGAATTGGGAACAACTATGATGCTAGTCTCTTGGCTATGAATATATCTGCCAGCTTAGGTCAGATAAATCAGCTTCAACACCATAGTGCTGCCGGCGGTGGTGGTGACGACCGCCGTACTGTTAACCGCTCCTAG | 678 | 0.4351 | MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSIAATAGHGLIAGLTGESVAAATNYHHTQNAAGGGNNNSNGRDRDHHYHHQFFPRDQHQHNLVRNFDAGIGNNYDASLLAMNISASLGQINQLQHHSAAGGGGDDRRTVNRS | 225 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g01514 | 225 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Trre15g01514 | 225 | MobiDBLite | consensus disorder prediction | 141 | 160 | - | - | |
Trre15g01514 | 225 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 149 | - | - | |
Trre15g01514 | 225 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g01514 | Trre-Chr15 | 11901274 | 11901951 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g01514 | 2 | 225 | AS2 family | AT1G65620 | 62.054 | 6.74e-81 | 238 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Trre15g01514 | LOB | 3.3e-42 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g01514 | - | - | mtr:25501092 | 414.075 |