Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01513 ATGAATTCCATCCAAGTTCTCTCTACCACTACAATCAAAACACCAAATAAAAAAATTTGTGATGACTCAAGTGATCATACAATCCACCTAACACCATGGGATCTCCAATTACTTTCATATGGAGTCAACCAAAAGGGTCTTCTTTATCACCACCCTTTGAACCTAGACACATCAAATCAAATCGAACACCTTAAACATTCTCTATCATCCACTCTTGAAATGTTTCCACCCTTTACAGGTCGGCTCAAAATTCAGGAACACGAAGATAATACTATCTCGTGTTTCATCACGTGCAACAATGAAGGTGCACTTTTTGTCCACGCTGTAGCAAAAAACACTAGTGTTGATGACATTCTTGGATCCACTTATGTTCCTCAAATTCTTCACTCATTTTTTCCACTTAATGGCGTTAAAAACTACGAAGGGACATCAAATCCATTATTCGCGGTCCAAGTAACAGAGCTAGATAACGGCATCTTCATTGGTTGCACAATTAATCATGTGGTTGCTGATGGTACGTCGATTTGGCATTTCATCAATTCATGGGCCAAAATCTCAAAGGGTTGTCTTAACATGACCAAAATTCCATCATTTGAACGTTGGTTTCCAAATGGTATTCAACTTCCGATTAGATTTCCTTTCACAATAGAACATCAAAATAATCTCTATAATAACGATAATCATAGAGAAGACAACCTCAATCCACCAGAGAGGTTATTTCATTTCCCAAAAGAGAATATTGCAAAACTAAAATTCAAAGCCAATTTAGAGGCTGGTACAAAGAACATATCTTCTTTGCAAGCACTTTTAACTCACATTTGGAGATCTATTATACGTTCCAAAAATCTTGACCCAGAAGAAGAAGTGAATTTTGGGGTGATTATAGGCATTAGACCAAGGTTGCTTCCTCCTTTGAAAGAGGGTTATTTTGGGAACGCTCTAATAGAATGTGTGGTAACCATGAAAGCTCATGATTTGTTGGAAGACGGTGGCCTTGGTAAAGGTGCTTTCGAAATGAACAAGATGATTGCTTTGCACTCTGATGAGAAGTTGAAAAATCACTATGAGAATTGGTTGAAAACACCGAGTTTTGTTAATGTTGGTATGTCCAATAATAAAACATTATTGATCAGTTCACCTTGGTTTGATGTTTATGCTAACGATTTTGGATGGGGAAAACCTGTGGCGGTTCGACATGGGGGTGAAAATAAAGAAAATGGAGTTATTAGTGTGTTTGCAGGTGTAGAAGAAGGTAGTATGGACCTTGAAGTCTGTTTTTCTTATGAAACTTTGGAGGCAATTTGTAATGATTTTGAGTTTATGGAGGCTGTGTCCAACTAA 1341 0.3736 MNSIQVLSTTTIKTPNKKICDDSSDHTIHLTPWDLQLLSYGVNQKGLLYHHPLNLDTSNQIEHLKHSLSSTLEMFPPFTGRLKIQEHEDNTISCFITCNNEGALFVHAVAKNTSVDDILGSTYVPQILHSFFPLNGVKNYEGTSNPLFAVQVTELDNGIFIGCTINHVVADGTSIWHFINSWAKISKGCLNMTKIPSFERWFPNGIQLPIRFPFTIEHQNNLYNNDNHREDNLNPPERLFHFPKENIAKLKFKANLEAGTKNISSLQALLTHIWRSIIRSKNLDPEEEVNFGVIIGIRPRLLPPLKEGYFGNALIECVVTMKAHDLLEDGGLGKGAFEMNKMIALHSDEKLKNHYENWLKTPSFVNVGMSNNKTLLISSPWFDVYANDFGWGKPVAVRHGGENKENGVISVFAGVEEGSMDLEVCFSYETLEAICNDFEFMEAVSN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01513 446 Gene3D - 2 209 IPR023213 -
Trre15g01513 446 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 442 - -
Trre15g01513 446 Gene3D - 236 440 IPR023213 -
Trre15g01513 446 Pfam Transferase family 21 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01513 Trre-Chr15 11895035 11896375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01513 64 432 Monolignol Biosynthesis Gene Families AT5G48930 27.649 4.95e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01513 - - psat:127075665 527.324