Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01510 ATGAGTTATTTCCGAGTCCTCTCCACCACTACAATCAAAGTACCAAATCACAATCTTTGTGATGACTCAAGTGTTCATAATAAAATCGATCTAACACCATGGGATCTTCAATTCCTTCCATATGGAGTCAACCAAAGGGGTCTTCTTTATCCCCACCCTTTGAAACAAGATACATCAAATCAAATCGAACACCTTAAAAACTCTCTTGCATCCACCCTTGAAATGTTTCCTCCCTTTTTAGGTCGTCTCAAAATTAAGGAATACCAAGATAATACTATCTCGTGTTCCATCACGTGCAACAATGAAGGTGCATTATTTGTCCACGCTGTAGCAGAAAACACTAGTGTCGATAACATTCTTGGATCCACTTATGTTCCCCAAATTCTTCACTCATTTTTTCCACTTAATGGTGTTAAAAACTACGAAGGGACATCAAATCCATTATTTGCAGTCCAAGTAACAGAGCTAGTTAATGGCATCTTCATTGGTTGCACAATTAATCATGTGGTTGCTGATGGTACGTCGGTTTGGCATTTCATCAATACATGGGCAAAAATTTCAAAGGGTTGTCTTGAAATAACCAAAATTCCATCATTTGAACGATGGTTTCCAAATGGTATTCAATGTCCAATTAGATTTCCTTTTGCAATAAAACCAGAAAATAATCATTATAATGATAACCATAAAGAAGACAACCCGAAACCATCGGTGACGTTATTTCATTTCACAAAAGAGAATATTGCAAAACTAAAATCCAAAGCCAACTTAGAGGCTGGGACAAAGAACATATCTTCTTTGCAAGCACTTTTCACTCACATTTGGCGATCTATTATACGTTCCAAATATCTTGACCCAGAAGAAAAAGTGAATTTTGTGGTGGTTATAGGCATTAGACCAAGGTTGATTCCTCCCTTGAAAGAGGATTATTTTGGGAACGCTATGATAGATTGTGTGGTTACCATGAAAGCTCGTGATTTGTTGGAAAACGGTGGGCTTGGTAAAGGTACTCTGGAAATGAACAAGATGATTGCTTTGCACTCTGATAAGAAATTGAAGAATCACTATGAAAATTGGTTGAAAACACCGAGTTTTATTAGTGTTGGTATGTACGATAGTAAAACTATAAATACCGGTAGTTCACCTCGGTTTGATGTTTATGGTAATGATTTTGGTTGGGGAAAACCTGTGGCAGTTCGACAAGGGGGTGAAAATAAAGAAAATGGATTTATTAGTGTGTTTGCAGGTACAGAAGAAGGTAGTATGGACCTTGAAGTGTGTTTATCTTATGAAACTTTGGAGGAAATTTGCAATGATCCCGAGTTCATGGAGGTTGTGTCCAACTAA 1344 0.3728 MSYFRVLSTTTIKVPNHNLCDDSSVHNKIDLTPWDLQFLPYGVNQRGLLYPHPLKQDTSNQIEHLKNSLASTLEMFPPFLGRLKIKEYQDNTISCSITCNNEGALFVHAVAENTSVDNILGSTYVPQILHSFFPLNGVKNYEGTSNPLFAVQVTELVNGIFIGCTINHVVADGTSVWHFINTWAKISKGCLEITKIPSFERWFPNGIQCPIRFPFAIKPENNHYNDNHKEDNPKPSVTLFHFTKENIAKLKSKANLEAGTKNISSLQALFTHIWRSIIRSKYLDPEEKVNFVVVIGIRPRLIPPLKEDYFGNAMIDCVVTMKARDLLENGGLGKGTLEMNKMIALHSDKKLKNHYENWLKTPSFISVGMYDSKTINTGSSPRFDVYGNDFGWGKPVAVRQGGENKENGFISVFAGTEEGSMDLEVCLSYETLEEICNDPEFMEVVSN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01510 447 Gene3D - 217 436 IPR023213 -
Trre15g01510 447 Pfam Transferase family 23 442 - -
Trre15g01510 447 Gene3D - 4 210 IPR023213 -
Trre15g01510 447 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01510 Trre-Chr15 11870000 11871343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01510 65 433 Monolignol Biosynthesis Gene Families AT5G48930 27.202 6.26e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01510 - - psat:127075665 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01510 15 11870000 11871343 Trre15g01510 15 11870000 11871343 ECH