Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01494 ATGGATCAAAATCTAAAACGGGAATGGTCCATCAATGACTTTGAGATCGGAAAGCCACTTGGGAGAGGGAAATTCGGCAGAGTCTATGTTGCCAGAGAAGTCAAGAGTAAATTTGTGGTTGCGTTGAAGGTTATCTTTAAGGAACAACTTGAAAAGTATAGAATTCAACATCAACTGAGAAGGGAAATGGAGATACAGATAAGTCTTAAACATCCAAACATCTTGAGTCTCTATGGTTGGTTTCATGATTCCGAGCGCGTTATCTTGATTCTTGAATATGCTCATAATGGTGAGCTATACAAAGAGCTTAGCAAAAGAGGCCGTTTCTCAGAGAAGCAAGCTGCAACGTACATTTTCAGCCTCACAGAGGCATTGGCATATTGTCACGAGAAGCATGTTATTCACAGGGATATCAAGCCTGAAAATTTGTTGCTTGACCATGAGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCAGTACAATCTAAAAGCAAAAGACAAACCATGTGTGGTACATTGGATTATTTAGCTCCTGAAATGGTAGAAAACAAAGATCATGATTATGCTGTTGATAACTGGACTCTTGGTATCCTTTGTTATGAGTTCCTCTATGGTGTTCCTCCATTTGAAGCTGAGAGTCAAGCTGATACCTTTGAAAGGATAAAAAAGGTTGATTTAAGCTTCCCTCCTAGCCCTCTTGTTTCTTCAGATGCCAAAAATCTGATAAGTCGGCTGTTGGTAAAGGATTCCTCAAGAAGGCTCTCACTCCAGAAGATAATGGAGCATCCTTGGATAATCAAGAATGCAAATCGTATGGGTGTCTGCTAG 828 0.4034 MDQNLKREWSINDFEIGKPLGRGKFGRVYVAREVKSKFVVALKVIFKEQLEKYRIQHQLRREMEIQISLKHPNILSLYGWFHDSERVILILEYAHNGELYKELSKRGRFSEKQAATYIFSLTEALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSKSKRQTMCGTLDYLAPEMVENKDHDYAVDNWTLGILCYEFLYGVPPFEAESQADTFERIKKVDLSFPPSPLVSSDAKNLISRLLVKDSSRRLSLQKIMEHPWIIKNANRMGVC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01494 275 CDD STKc_Aurora 13 265 - -
Trre15g01494 275 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Trre15g01494 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Trre15g01494 275 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01494 275 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 6 275 IPR030616 GO:0004672
Trre15g01494 275 FunFam Aurora kinase A 6 97 - -
Trre15g01494 275 PIRSF ILK 2 270 - -
Trre15g01494 275 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Trre15g01494 275 Gene3D Transferase(Phosphotransferase) domain 1 98 273 - -
Trre15g01494 275 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01494 275 FunFam Serine/threonine-protein kinase ark1 6 274 - -
Trre15g01494 275 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01494 275 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01494 Trre-Chr15 11746718 11750043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01494 14 268 CBL-interacting serine-threonine protein kinases AT5G10930 39.695 7.24e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Trre15g01494 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01494 K08850 - gmx:100775802 498.819