Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01485 ATGGGGACATTTAGGTTTGCTATTAAAGAAGCATGGGAGACGGCATTCTTAGTTGCTAAGTGCTTCTGCGTTTTACATGTTACCGACAACTATCTGATTAATCCTGTTATCACTTATGGTCCAAGCATGCTTCCTACGATCGATGCGACACCAACCATCTTTCTTACTGAAAGGATCTCAACTCGATTTGAGGGTGATATCATTACATATGTTTCTAGTCCCGAAAACAGCGATAAGCTTGAGACAGTTGAGGTTCCAAAGGGTCATGTTTGGGTAGAGGGTGATAACAAATATAATACCAACGATTCTAGAAGTTTCGGTCCAGTTCCTTATGGCCTTATTGAGAATAAGCTATTCTGGAGGGTATCGCCACTTAAAGATTTTGGATCGTTCTGGAAAAAATGA 405 0.4049 MGTFRFAIKEAWETAFLVAKCFCVLHVTDNYLINPVITYGPSMLPTIDATPTIFLTERISTRFEGDIITYVSSPENSDKLETVEVPKGHVWVEGDNKYNTNDSRSFGPVPYGLIENKLFWRVSPLKDFGSFWKK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01485 134 Gene3D Umud Fragment, subunit A 27 132 - -
Trre15g01485 134 SUPERFAMILY LexA/Signal peptidase 31 132 IPR036286 -
Trre15g01485 134 CDD S26_SPase_I 35 114 IPR019533 GO:0004252|GO:0006465
Trre15g01485 134 PRINTS Bacterial leader peptidase 1 (S26A) family signature 31 47 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre15g01485 134 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 104 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre15g01485 134 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 63 132 - -
Trre15g01485 134 Pfam Signal peptidase, peptidase S26 76 120 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01485 Trre-Chr15 11680236 11681166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01485 43 131 MADS-box Gene Family AT1G29960 38.462 1.40e-23 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01485 K09647 - gmx:100805997 155.992