Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01481 ATGAAAATCCCAATTTTTCTAACACCATTGCTTCTCTGCCTCTTCATCTCCTTAGTCCAAGGACAAACCTCCAAATGTGACATCCAAGATAATGGTTCAACCCTCAAAGTATTCCATATCTTTAGCCAATGTTCTCCATTCAAACCATCAAAACCAATGTCATGGGAAGAAAGTGTCCTACAACTACAAGCTAAGGACCAATCTAGAATGCAATACTTGTCTAACTTAGTTGCTAGAAAATCAATTGTACCAATAGCCTCAGCAAGACAAATTATTCAAAGTCCTACATACATTGTCAAGGCTAAAATTGGTACTCCACCTCAAACTTTGCTTTTGGCTTTGGATACTAGTAATGATGCTGCTTGGATTCCTTGTACTGGTTGTGTTGGTTGTTCAACTTCAAAACCTTTTGCTCCTATTAAGTCCACAAGTTTTAAGAATGTTGGATGTGGTTCTTCTCAGTGTAAACAGGTACCCAACCCCAGTTGCGGTGGAAGCGCGTGTGCATTCAACTTCACTTATGGAAGCTCCTCAGTGGCAGCAAGTGTGGTCCAAGACACACTTACCTTAGCCACTGACCCAATTCCATCCTACACTTTTGGTTGTGTTCAAAAACAAACTGGGTCTTCAGCACCTCAACAAGGTTTATTGGGCTTGGGCCGAGGCCCATTGTCGCTCTTGGCCCAAACCCAAAATCTTTACAAATCAACCTTCTCTTACTGTTTGCCTAGCTTCAAATCACCCAACTTTAGTGGATCATTGAGACTTGGGCCTGTGTACCAGCCCAAGAGGATTAAGTATACACCACTTCTCAGAAACCCTAGAAGATCATCACTCTATTATGTTAACTTGGTTGCTATTAAAGTTGGCCGGAAAATCGTCAATATCCCTCCGGAAGCATTGGCCTTCAACCCAACCACCGGTGTTGGAACCATTTTCGATTCTGGTACGGTATTTACTCGGCTAGTTGAACCGGTATACACTGCTGTAAGAAATGAATTTCGTCGACGAGTTGGCCCAAAACTCATCCCGACTACCCTAGGCGGCTTTGACACATGCTACAATGTCCCAATAGTTGTACCAAATATAACATTCCTGTTTTCGGGCATGAATGTAACACTACCACCGGACAACATTCTCATACATAGCACCGCCGGCAGCACCACATGTTTGGCCATGGCGGCGGCTCCAGACAATGTGAACTCGGTGTTGAATGTGATAGCCAATTTGCAACAGCAAAACCACCGTGTGCTATTCGATGTGCCCAACTCAAGAATTGGTATTGCTCGTGAACTTTGCACCTAA 1305 0.436 MKIPIFLTPLLLCLFISLVQGQTSKCDIQDNGSTLKVFHIFSQCSPFKPSKPMSWEESVLQLQAKDQSRMQYLSNLVARKSIVPIASARQIIQSPTYIVKAKIGTPPQTLLLALDTSNDAAWIPCTGCVGCSTSKPFAPIKSTSFKNVGCGSSQCKQVPNPSCGGSACAFNFTYGSSSVAASVVQDTLTLATDPIPSYTFGCVQKQTGSSAPQQGLLGLGRGPLSLLAQTQNLYKSTFSYCLPSFKSPNFSGSLRLGPVYQPKRIKYTPLLRNPRRSSLYYVNLVAIKVGRKIVNIPPEALAFNPTTGVGTIFDSGTVFTRLVEPVYTAVRNEFRRRVGPKLIPTTLGGFDTCYNVPIVVPNITFLFSGMNVTLPPDNILIHSTAGSTTCLAMAAAPDNVNSVLNVIANLQQQNHRVLFDVPNSRIGIARELCT 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01481 434 FunFam aspartyl protease AED3 75 257 - -
Trre15g01481 434 Gene3D Acid Proteases 258 434 IPR021109 -
Trre15g01481 434 PANTHER ASPARTYL PROTEASES 11 427 IPR001461 GO:0004190|GO:0006508
Trre15g01481 434 Pfam Xylanase inhibitor C-terminal 280 429 IPR032799 -
Trre15g01481 434 SUPERFAMILY Acid proteases 95 433 IPR021109 -
Trre15g01481 434 FunFam Aspartyl protease AED3 258 434 - -
Trre15g01481 434 Pfam Xylanase inhibitor N-terminal 97 257 IPR032861 -
Trre15g01481 434 Gene3D Acid Proteases 71 257 IPR021109 -
Trre15g01481 434 ProSiteProfiles Peptidase family A1 domain profile. 97 429 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01481 Trre-Chr15 11643031 11646540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01481 97 433 Miscellaneous Gene Families AT1G77480 24.934 4.60e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01481 - - gmx:100788182 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01481 15 11643031 11646540 Trre15g01481 15 11643031 11646540 ECH