Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01467 ATGAACATGTTAGGCTTAAGAGACTTACTTGTCATAGCTCAAACTCCTTCATCTCTTCACAACCAACAAAACCAACCCATTTCTGATCATCATCATCATCCCTTACCTTCATCATCACCACCTCTAAGTGTTGGTCTTGGAATTTTTCCACTCCTAACTACTACTACTCATCCTCATCATCAAAATCACAACCAAAACAATGATACTACTACTAATATTCATCAAGACTCAAACTTTTGGAATCTCAAGATGTCTCAACCACAACAACTCATGATGATGAATTCCACAACAAAAAGGGTTGAACAAGAACAAGAAGAAGAAAATATTAATGGTGGTAGTAGTGAGTTTAGGGCATGTTTGGATTGTGGAAACAGAGCTAAGAAAGATTGTACTTTTAAAAGATGTAGGACTTGTTGTAAAGGTCGTGGTTTTGATTGTAGTACTCACGTGAAGAGCACGTGGGTACCGGCTTCGTTGCGACGAGATCGGAAAATGGTGGTGGCTGAAGGTGGTGGTGACAGTGGTGGTGGTGGTTCTTCTGGTACTAAGAGGCAGAGGATTTTGGTTTCATCATCACATACACATAATGCTGCTGCCACTTCTCATAGTTCTAGTTCTAATGCTGCTGCCACTTCTCATATTACTAGCTCTTGTCACCAAGATGCTAGCTTCAAACAATCTTTGCCACGGTATGTTCGAGCACCTGCTGTTTTGAAGTGCCATAGAGTTTCTGCTATTGGCAATGGTGAAGATGAACTTGCTTATTTAGCCACAGTGAATATTAGTGGTCATGTCTTCAAAGGGTTTCTTTATGATCAAGGTATTATTGATGCAAAAAATGAAACAATGCCTTGTGTTTCAGAACTTCAACTTGGAAGTAATGGCAGTGGAAAGAGTTATAGGGAATGTTCTTCTTCTGCAATTCAGGTTCCAACTAGTGCATATCCTGCATCTGCTTGCTAA 963 0.3998 MNMLGLRDLLVIAQTPSSLHNQQNQPISDHHHHPLPSSSPPLSVGLGIFPLLTTTTHPHHQNHNQNNDTTTNIHQDSNFWNLKMSQPQQLMMMNSTTKRVEQEQEEENINGGSSEFRACLDCGNRAKKDCTFKRCRTCCKGRGFDCSTHVKSTWVPASLRRDRKMVVAEGGGDSGGGGSSGTKRQRILVSSSHTHNAAATSHSSSSNAAATSHITSSCHQDASFKQSLPRYVRAPAVLKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGIIDAKNETMPCVSELQLGSNGSGKSYRECSSSAIQVPTSAYPASAC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01467 320 NCBIfam LRP1 C-terminal domain 228 275 IPR006511 -
Trre15g01467 320 NCBIfam putative zinc finger domain, LRP1 type 119 159 IPR006510 -
Trre15g01467 320 MobiDBLite consensus disorder prediction 19 43 - -
Trre15g01467 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 45 304 IPR007818 GO:0003700|GO:0006355
Trre15g01467 320 Pfam Domain of unknown function (DUF702) 118 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01467 Trre-Chr15 11484150 11486087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01467 1 307 C2H2 Transcription Factor Family AT5G12330 40.323 6.02e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre15g01467 DUF702 2.6e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01467 - - gmx:100777812 298.901