Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01461 ATGGGTTATCAATATCGTTCAGGAAACTGGCAGAACGAAGACAACAACTCAGTTCATGATGTCAGAGCTCTTAGATATCTATTGGCTATTAATTCTACAAATAATTCTTCTTCTGTTGGTATCAACAATCGCAATATTGTAAGAGGATCAAGAACCACCACAGTTCAATCAATTCATGAAAACACAAACACAACCAATACTTTTGGTCACGGTGATGGTAGTGATCATCACTATCTCACTCCTAGTATATTACCAACAACTACTACTATTAACAATTATAATGATAATCGTGTTGCTTCTTCCTCTTTCGTGTCTGCAAGACATCTTGGATCAACTTTGACCACCATCAATAGAGGTAATAACAACATGTCGTCATTATTGGGTTTATCATCTGTGTTATATCCAAATATTGGAGGACAGCCTGCAGGACCCGCCGCTCTATATAACAACAACAATCTAAGTGGCGGAGTTGTAGGAAACCGTAGCAGTAATAGTAATCATAATCTGAATAATGGTAGAATTAATAATGACGCTGCTACTGGCGCTGCTGGTCCTATTAGAAATGACGACCTTGGGCGTTCTTTATCCTTAGAGAGAATTAGATCGTATGATCAATTTTTGAGAGGCGATAATTATGGTCAAGGCTCACAAAACGTTGGAACCACTAGCAAAAGACGAATAATTCCTCATATGTGTCCTCATCAAGACAGTCACAACATGTCTTCTTCAACTTCATACACATCACATGGGCACTATAGTGGTAATAGTGTCATTTCTAATATGTTGAACCGAAACATGATGAATCAAGCTATTGTTGCAGGTGCAGGAGAGAGTAGTACTAGCACTACTCAGTCTCGCATAAATAGTCATATAGAAAGTCGTGGTCAAACAAGTTTTATTGATCTACCATATCAATCTAGTTCTACTAATGAGCCAATTGATATTAATAGATTTTTGCTCCCACCTCGACAAGTTCATCCTTTGAATAACTTCATCAGCAGAAGATATGATCCTTCAGCTACCTCTGGATCATCTTTTTATACCTCTACAACGACAAGAGGATTGTTAGAAACATCTCAAACTGCCACACCTTTCCACTTATACTACAATTTTACGTCTTCTGCAACTAGTGGTGGTGGTTCTTCTTTTGGAAGCACAAGTTCGGGACAAAATCATAGTAATAATAACAACAACTTTGATTTCTTTGATAGTTTTCATCGGGAAATTGATGATGTATTTAGTCATAGCACAATAAGTATTCAAGAATATACAAGGGTATTGCCAAGTGGTCGTATGTATCGATTTTTAGCCCCAACTCTTGTTCCCGTGCAGCTTAGTAGTTATGTACCACCGCAACGACCACTGCCGATTTCTGACCCTTCACCAAACAATTATCGGCCAAACCTTTCTCCATCTTCTTCTGGATCGAGGTTTGGTACTACTTTAGAAGCTAATCAGTATGTGCAGACTAGTTCAACACTGACAAGATTAGTGGATCGAATTCGTCTTGGAGGTCATTATAACCACATTTTTGTTTCAAATTTTTCTGATCTTATGGCAGAGAGGAACGAACTCGGGAATGAGTTGGCGACTCACTTTAGAAGGGTCAATGTGGGACTGACGGAGGGAGAGATCCTCACGTTCATTCAACAAGAAACATTTCAAACAAGTCCTGAAGAGACCAACACCCAGAACCAAACTTGCACCATATGTCAGGAAGACTATGTGGATGGAGAGCGGATAGGAAAAATAGATTGTTTGCACATGTATCACCTTGATTGTATCAAACAATGGTTGATGCAAGAGAATATATGTCCAATATGCCGACATATAGCTTTGGAAATTGGTCATGAAGAGGAGGATGAAAGTCAACGACAATGA 1881 0.3881 MGYQYRSGNWQNEDNNSVHDVRALRYLLAINSTNNSSSVGINNRNIVRGSRTTTVQSIHENTNTTNTFGHGDGSDHHYLTPSILPTTTTINNYNDNRVASSSFVSARHLGSTLTTINRGNNNMSSLLGLSSVLYPNIGGQPAGPAALYNNNNLSGGVVGNRSSNSNHNLNNGRINNDAATGAAGPIRNDDLGRSLSLERIRSYDQFLRGDNYGQGSQNVGTTSKRRIIPHMCPHQDSHNMSSSTSYTSHGHYSGNSVISNMLNRNMMNQAIVAGAGESSTSTTQSRINSHIESRGQTSFIDLPYQSSSTNEPIDINRFLLPPRQVHPLNNFISRRYDPSATSGSSFYTSTTTRGLLETSQTATPFHLYYNFTSSATSGGGSSFGSTSSGQNHSNNNNNFDFFDSFHREIDDVFSHSTISIQEYTRVLPSGRMYRFLAPTLVPVQLSSYVPPQRPLPISDPSPNNYRPNLSPSSSGSRFGTTLEANQYVQTSSTLTRLVDRIRLGGHYNHIFVSNFSDLMAERNELGNELATHFRRVNVGLTEGEILTFIQQETFQTSPEETNTQNQTCTICQEDYVDGERIGKIDCLHMYHLDCIKQWLMQENICPICRHIALEIGHEEEDESQRQ 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01461 626 MobiDBLite consensus disorder prediction 158 177 - -
Trre15g01461 626 SUPERFAMILY RING/U-box 549 614 - -
Trre15g01461 626 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 215 613 IPR045191 GO:0061630
Trre15g01461 626 Pfam Ring finger domain 567 609 IPR001841 -
Trre15g01461 626 MobiDBLite consensus disorder prediction 158 190 - -
Trre15g01461 626 ProSiteProfiles Zinc finger RING-type profile. 568 609 IPR001841 -
Trre15g01461 626 SMART ring_2 568 608 IPR001841 -
Trre15g01461 626 MobiDBLite consensus disorder prediction 462 477 - -
Trre15g01461 626 MobiDBLite consensus disorder prediction 452 477 - -
Trre15g01461 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 612 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01461 Trre-Chr15 11433761 11437532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01461 514 614 C3H Transcription Factor Family AT2G15530 36.538 1.12e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01461 - - tpra:123896003 564.688