Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01452 ATGATGTACAATGACCCTCATAACCCTCAGCACCAGTTTCAACAGCAACATCAACAACAACAACAACAGCAACAGCAACAGCAACAACAACAACAACAACAACAGCAGCATCAGCATTTTCACCATCAGCAACAGCCAGGTCCCGAATTCCACCGTGGACCTCCGCCACCGATGCCTCAGCAGCCTCCGCCTATGATGCGGCAGCCTTCCGCTTCGTCCACTAACCTCGCCCATGAGTTTCACCATCCTGGACCTGGTGGCCCCCCTGGTCCTCCTCCTCATTACGATGTTCATAATGATATCCATGGTGCAAAAAGAATGAGAAAGCTCACTCAAAGGAAGGCAGTTGATTATACGAGCACAGTTGTGCGCTATATGCAGATTCGCATGTCGCAGCGTGATTCAAGAGATAGGACAGTACTGCAACCTACACCGGCAGCAGCGATTGATATGTTGCCAGCAGCTGGCTATTCAGACAACCCATCCACAAGCTTTACTGCTAAATTTGTTCATACATCTCTAAATAAAAATCGTTGTCCTATTAACCGTGTTCTTTGGACTCCTACAGGTCGGCGTCTTATTACCGGCTCACAGACCGGGGAATTTACACTTTGGAATGGACAGTCTTTTAATTTTGAAATGATACTTCAGGCTCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAATGACAATTGGATGGTCTCTGGGGATGATGGGGGTGCAATAAAGTATTGGCAGAACAACATGAATAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTCCGTGACTTAAGTTTCTGTAGGACAGATTTGAAGTTCTGTTCGTGTTCTGATGATACCACAGTTAAAGTTTGGGATTTCGCACGCTGTCAAGAAGAGTGTTCATTAACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCATCCAACAAAATCTCTCTTAGCATCAGGTGGGAAAGACAATCTTGTGAAACTTTGGGATGCTAAAAGTGGGAAAGAGCTTTGCTCGTTTCATGGACACAAAAACACTGTGCTTTGTGTGAAATGGAATCAAAATGGAAACTGGGTGTTAACGGCTTCTAAAGATCAAATAATAAAGCTTTATGACATAAGGGCAATGAAGGAGCTCGAATCATTCCGTGGACACCGGAAGGATGTTACTACTTTGGCTTGGCATCCATTCCATGAAGAATACTTTGTCAGTGGGAGCTATGATGGTTCCATCTTCCATTGGCTTGTCGGGCATGATACACCACAAATTGAAATTTGCAACGCTCATGATAATAATGTGTGGGATCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTGGTAGCAGTGATCATACAACAAAGTTTTGGTCTAGAAACAGGCCGGGCGACAGTGCTCGTGATAGATATAACAATGGCATGCAAGGATATGCGGAGCAAAATCCTGTTGCTGGTCGTGGGGGTGGTAATTTTGCAATGCCTGAAGGCCCGACAACTCCAGGACCATTTGCCCCCCCTGGGCTGACTCGAAATGAGGGTACCATTCCAGGTGTTGGAGTTGCAATGCCCTTATCTATTCCTTCTCTTGATGGGCCTCAAGGGGAGCAGAAGCAGCCCCATCCTGGTGCAATGGGTGCTCCTCCTCTTCCCCCGGGTCCACATCCCTCTCTTCTTAACCCCAACCAACAACAACCATTCCAACAGAATCCACAGCAGATTCCACAACATCAGCACCAGTCACTACCACAACAGATGGGTTCTTTGCCAATGCCTCCAAATATGCCACAGCTACAGCACCCTTCCCATTCTCCTATGGTCCCTCACCAACATTTACCCCGCCCTCCCCCCCAAATGCCACTTGGAATGCCAGGATCTTTACCAGTGCCTGCATCTCATCCAATGTCAATCCCAGGACCTATGGGGATGCAGGGTTCAATGAATCAGATGGGTCCTCCAATGCCACAAGGTCATTATGGGGGCATGAATCAAATGCATTCAGGATCCTTGCCTACAAGTGGAGGACCACCTCTAGGAGGTTTCCCAAACAATATGCAAGGGCCACCAAATACCAGTTATCCTCAAGGTGCTCCATTTAACAGACCACAAGGTGGACAAATGCCCATGATGCAAGGGTATAATCCTTACCAGTCTGGAAATCAACCCGGGATGCCTCCCAACGCACAACCAGGAGGACCACACTCTCAAATGCCTCAATAA 2223 0.4714 MMYNDPHNPQHQFQQQHQQQQQQQQQQQQQQQQQQQHQHFHHQQQPGPEFHRGPPPPMPQQPPPMMRQPSASSTNLAHEFHHPGPGGPPGPPPHYDVHNDIHGAKRMRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPAAGYSDNPSTSFTAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLASGGKDNLVKLWDAKSGKELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHDTPQIEICNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWSRNRPGDSARDRYNNGMQGYAEQNPVAGRGGGNFAMPEGPTTPGPFAPPGLTRNEGTIPGVGVAMPLSIPSLDGPQGEQKQPHPGAMGAPPLPPGPHPSLLNPNQQQPFQQNPQQIPQHQHQSLPQQMGSLPMPPNMPQLQHPSHSPMVPHQHLPRPPPQMPLGMPGSLPVPASHPMSIPGPMGMQGSMNQMGPPMPQGHYGGMNQMHSGSLPTSGGPPLGGFPNNMQGPPNTSYPQGAPFNRPQGGQMPMMQGYNPYQSGNQPGMPPNAQPGGPHSQMPQ 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 206 IPR001680 GO:0005515
Trre15g01452 740 FunFam Flowering time control protein FY 123 331 - -
Trre15g01452 740 MobiDBLite consensus disorder prediction 711 726 - -
Trre15g01452 740 MobiDBLite consensus disorder prediction 561 593 - -
Trre15g01452 740 SMART WD40_4 293 332 IPR001680 GO:0005515
Trre15g01452 740 SMART WD40_4 162 206 IPR001680 GO:0005515
Trre15g01452 740 SMART WD40_4 335 374 IPR001680 GO:0005515
Trre15g01452 740 SMART WD40_4 421 460 IPR001680 GO:0005515
Trre15g01452 740 SMART WD40_4 377 417 IPR001680 GO:0005515
Trre15g01452 740 SMART WD40_4 209 248 IPR001680 GO:0005515
Trre15g01452 740 SMART WD40_4 251 290 IPR001680 GO:0005515
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
Trre15g01452 740 MobiDBLite consensus disorder prediction 670 740 - -
Trre15g01452 740 FunFam Flowering time control protein FY 332 469 - -
Trre15g01452 740 PANTHER WD40 REPEAT PROTEIN 98 730 IPR045245 GO:0031124
Trre15g01452 740 MobiDBLite consensus disorder prediction 1 43 - -
Trre15g01452 740 SUPERFAMILY WD40 repeat-like 170 459 IPR036322 GO:0005515
Trre15g01452 740 Gene3D - 123 332 IPR015943 GO:0005515
Trre15g01452 740 Pfam WD domain, G-beta repeat 259 290 IPR001680 GO:0005515
Trre15g01452 740 Pfam WD domain, G-beta repeat 427 460 IPR001680 GO:0005515
Trre15g01452 740 Pfam WD domain, G-beta repeat 214 247 IPR001680 GO:0005515
Trre15g01452 740 Pfam WD domain, G-beta repeat 336 374 IPR001680 GO:0005515
Trre15g01452 740 Pfam WD domain, G-beta repeat 298 332 IPR001680 GO:0005515
Trre15g01452 740 Pfam WD domain, G-beta repeat 380 416 IPR001680 GO:0005515
Trre15g01452 740 Gene3D - 333 473 IPR015943 GO:0005515
Trre15g01452 740 MobiDBLite consensus disorder prediction 49 66 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 460 IPR001680 GO:0005515
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 428 460 - -
Trre15g01452 740 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Trre15g01452 740 PRINTS G protein beta WD-40 repeat signature 447 461 IPR020472 -
Trre15g01452 740 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Trre15g01452 740 Coils Coil 10 34 - -
Trre15g01452 740 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 376 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 248 IPR001680 GO:0005515
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515
Trre15g01452 740 MobiDBLite consensus disorder prediction 545 560 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 416 - -
Trre15g01452 740 MobiDBLite consensus disorder prediction 685 700 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 337 - -
Trre15g01452 740 CDD WD40 178 460 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 290 IPR001680 GO:0005515
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Trre15g01452 740 MobiDBLite consensus disorder prediction 461 617 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 248 - -
Trre15g01452 740 MobiDBLite consensus disorder prediction 1 99 - -
Trre15g01452 740 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 416 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01452 Trre-Chr15 11356871 11369744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01452 332 465 Miscellaneous Gene Families AT5G08390 24.444 1.85e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01452 K15542 - gmx:100788493 1184.86