Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01450 ATGTCTTCACCACATGAAAATTCTGATATGAAAGATGTATCATCAGGTCCACAAAAAAGGCTATCAAGTCTGATGCATCAAGCTGGAAACAAGTTTTGCGCCGACTGCGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCGGGTGTACATAGAAGTCTAGGAGTCCACATATCAAAGGTTGCATCGTTGAAGCTAGATCAGTGGACAGATGAACAAGTTGATGCATTAGAGAAGTTAGGTGGAAATACACTGTTAAATAAAAAGTATGAAGCTTACATCCCAAGTACTATAAAAAAGCCAAAACCACATACCTCGATCGAAGAGCGCTCCGAGTATATCAGGAAAAAATATGAACAATTATTGTTCATGGAGTGCGATGACAATGCAGCGTGCGCAATTGTACCAGCTCAAGGAAGAAGTTTATCATTGCTTCAGAGTAGTTCTTCATGTTACACTTTTCATATGGACCCTAAAAAATACGAAAAAGCCCCAACAAAACATCGTATCGGACATGCGTTTCGAAATAGTTGGGCAAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTAGGGTTGATTAAGGTTAATGTTGTGAAAGGCACTCACTTGGCTGTTAGAGATGTAATGACCAGTGACCCTTATGTGATCCTTTCTTTGGGACACCAATCGGTAAAAACGCGCGTTATAAAGAACAATTTGAATCCAGTTTGGAATGAAAGTCTAATGCTATCAATTCCAGAAAACATTCCTCCCCTTAAAGTGCTAGTTTATGATAAAGATACATTTTCAACCGATGATTTTATGGGTGAGGCTGAAATCGACATTCAACCATTAGTTTTAGCTGCAATTGCATATGAAAAATCTTCAAGCAATGAGGCCATGCAGTTTGAGAAATTTGTAGCAAGCAAGAACAATACTCTTGTTAGAGATGGTACCATATCCCTTGATGAAGGAAAGATCAAACAAGAAATATCAGTGAGGCTACAGAATGTTGAGAGAGGTGTTCTTGAGATTGAGCTTGAATGTGTTCCTCTTACTCAATAG 1104 0.3868 MSSPHENSDMKDVSSGPQKRLSSLMHQAGNKFCADCGTPEPKWVSSSLGVFICIKCSGVHRSLGVHISKVASLKLDQWTDEQVDALEKLGGNTLLNKKYEAYIPSTIKKPKPHTSIEERSEYIRKKYEQLLFMECDDNAACAIVPAQGRSLSLLQSSSSCYTFHMDPKKYEKAPTKHRIGHAFRNSWARKDSEHKSSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSSSNEAMQFEKFVASKNNTLVRDGTISLDEGKIKQEISVRLQNVERGVLEIELECVPLTQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01450 367 CDD C2_ArfGAP 210 354 - -
Trre15g01450 367 Pfam Putative GTPase activating protein for Arf 19 134 IPR001164 GO:0005096
Trre15g01450 367 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 208 301 IPR035892 -
Trre15g01450 367 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g01450 367 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 209 367 - -
Trre15g01450 367 SMART arf_gap_3 18 140 IPR001164 GO:0005096
Trre15g01450 367 CDD ArfGap 21 127 - -
Trre15g01450 367 Gene3D Arf GTPase activating protein 2 140 IPR038508 -
Trre15g01450 367 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 367 IPR044518 GO:0005096|GO:0005543
Trre15g01450 367 ProSiteProfiles ARF GTPase-activating proteins domain profile. 18 140 IPR001164 GO:0005096
Trre15g01450 367 SUPERFAMILY ArfGap/RecO-like zinc finger 18 133 IPR037278 -
Trre15g01450 367 ProSiteProfiles C2 domain profile. 194 309 IPR000008 -
Trre15g01450 367 FunFam stromal membrane-associated protein 1 isoform X1 3 138 - -
Trre15g01450 367 PRINTS HIV Rev interacting protein signature 30 49 IPR001164 GO:0005096
Trre15g01450 367 PRINTS HIV Rev interacting protein signature 70 91 IPR001164 GO:0005096
Trre15g01450 367 PRINTS HIV Rev interacting protein signature 49 66 IPR001164 GO:0005096
Trre15g01450 367 Gene3D C2 domain 209 366 IPR035892 -
Trre15g01450 367 SMART C2_3c 212 307 IPR000008 -
Trre15g01450 367 Pfam C2 domain 212 298 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01450 Trre-Chr15 11323948 11326487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01450 18 367 C2H2 Transcription Factor Family AT4G21160 46.176 8.47e-113 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01450 K12486 - gmx:100789552 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00382 5 2398207 2401202 Trre15g01450 15 11323948 11326487 PCT