Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01448 ATGGGTCGTGGGAGTGGAAAATTAACCTTGAAACAAATTCAAAATGAGAAAGTTCGGAAATCAGCTTTCATTCAAAGAAATAAAGGATTAACAAAAAAAGTCTCTGAGTTTTCTAAAAACTTTGGAGTTGATGTTTGCTTAATTGTGTACGATGGTGATGGTAAACCTATGACTTGGCCACAAGATTTCCCAACTCTACAATCCATGCTTACAAAATATGAGCAACAAAAGATTGAGACAACTTCAAAGGAATTTGATGCGAAGGATTATTTTGCAAATAAGAAGAATATGGTTGAAGCTGAGATTTTTAGAGTGCGCAAAAAGATCGTGATGAACAAATATCCAACTTGGAGTCGATGTTTCAATAACATGGAAACGGAGCAACTCAAAGGTTTCATTGATATTGTAGATCTCAAGATTCAACATTGTAATCAAAGAATCAACATGCTGAAAAATATGCAACAAAGTGATCAAACTAGTTTCATGCAAAATATTGCTCAAATGCAAAGTGTGGCTCTAGAGAATGTTGCATCTCCACAATTCAGTCAACTTGATGATCCTATGAACCCACTTATTGATATTAGTGAGATGATAGATTTCAGTGATCTTGTGGAGTGGGATGATCTAGTGGATAAATCTGATCAGAAATTGGCTACTCAACTTGTGGATTTTGATGATTTTGCAGCTACTCAATTTGATGTGTTTGAAGGCCAAGATATTTCCTTTTTATCAGAAATTGAGCAACAATGTACAGCTTTGGATGCCTTTCCCTAA 774 0.3501 MGRGSGKLTLKQIQNEKVRKSAFIQRNKGLTKKVSEFSKNFGVDVCLIVYDGDGKPMTWPQDFPTLQSMLTKYEQQKIETTSKEFDAKDYFANKKNMVEAEIFRVRKKIVMNKYPTWSRCFNNMETEQLKGFIDIVDLKIQHCNQRINMLKNMQQSDQTSFMQNIAQMQSVALENVASPQFSQLDDPMNPLIDISEMIDFSDLVEWDDLVDKSDQKLATQLVDFDDFAATQFDVFEGQDISFLSEIEQQCTALDAFP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01448 257 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Trre15g01448 257 Gene3D - 15 98 IPR036879 GO:0003677|GO:0046983
Trre15g01448 257 ProSiteProfiles MADS-box domain profile. 3 55 IPR002100 GO:0003677|GO:0046983
Trre15g01448 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
Trre15g01448 257 SUPERFAMILY SRF-like 5 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01448 Trre-Chr15 11310127 11310900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01448 1 146 Type I MADS-box Gene Family AT5G55690 32.680 5.96e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g01448 SRF-TF 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01448 - - tpra:123922587 299.286