Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01447 ATGACGAAAGTAAACAAGAATAACTATGTATCGATTCCGATGTTTTTTTCTCGTCTTGCAGGGTCGCTGGTGATTGCTCTTGCTAGGATGACATTGAGTAATCCACTCTTTGATGCTATCCGGAGTAACAGTGATGTTGATCCTCCTCAAATTGAAGAGTCCATAGATGTTGGTGTATTGATGAATGACCCTGCACAAACTGCTCCTAAACCTGCTGGAACTATTTTAAGCAGTGTTCGTGAGCTTTTAGATTGTCCTGTGTGCCTGAATCCGATGTACCCTCCAATTCATCAGTGTTCAAATGGTCATACTATATGCTCAGATTGCAAACCGCGGGTACATAACCGGTGCCCTACTTGTCGGCATGAGCTGGGAAATATTAGATGTCTAGCATTGGAGAAGGTGGCTTCATCATTTGCACTCCCTTGTAAATACAAAGCTTTTGGGTGCATCGGAATATACCCATACTATGACAAGCCAGAACATGAATCTCAATGTTCATATAGACCTTATAACTGTCCATATGCTGGTTCCCAATGCTCTATTGTGGGTGATATATCTTACCTGGTGAACCATCTGAAAGAAGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTCAAATCAAATCCTCATGAAGTCGAAAATGCCACATGGATGTTAACGGTTTTCAGCTGTTACGGTCAGTACTTTTGTCTACATTTTGAAACTTTTCAACTTGGAACTGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAGCGAGGCAAAAAAGTATAGCTACAGTCTAGAGGTAGGCGGAAACGGGAGGAAGATGGTTTGGCAAGGAGTGCCAAGAAGCATCAGGGAAAGCCACTCCAATATTCGCGACAGTTTTGACGGTCTAATTATTCAGAGGAATATGGCACTCTTCTTTTCAGGTGGTGAACGGAAAGAGTTAAAGCTAAGGGTTACCGGTAGGATATGGAAAGAGCAATGA 1002 0.4232 MTKVNKNNYVSIPMFFSRLAGSLVIALARMTLSNPLFDAIRSNSDVDPPQIEESIDVGVLMNDPAQTAPKPAGTILSSVRELLDCPVCLNPMYPPIHQCSNGHTICSDCKPRVHNRCPTCRHELGNIRCLALEKVASSFALPCKYKAFGCIGIYPYYDKPEHESQCSYRPYNCPYAGSQCSIVGDISYLVNHLKEDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCYGQYFCLHFETFQLGTAPVYIAFLRFMGDDSEAKKYSYSLEVGGNGRKMVWQGVPRSIRESHSNIRDSFDGLIIQRNMALFFSGGERKELKLRVTGRIWKEQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01447 333 ProSiteProfiles Zinc finger SIAH-type profile. 138 198 IPR013010 GO:0008270
Trre15g01447 333 SUPERFAMILY RING/U-box 77 125 - -
Trre15g01447 333 SUPERFAMILY TRAF domain-like 141 330 - -
Trre15g01447 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 193 IPR013083 -
Trre15g01447 333 FunFam E3 ubiquitin-protein ligase SINAT3 137 193 - -
Trre15g01447 333 Pfam Seven in absentia protein family 127 326 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre15g01447 333 FunFam E3 ubiquitin-protein ligase SINAT5-like 194 326 - -
Trre15g01447 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 137 IPR013083 -
Trre15g01447 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 194 326 IPR008974 GO:0005515
Trre15g01447 333 ProSiteProfiles Zinc finger RING-type profile. 85 121 IPR001841 -
Trre15g01447 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 75 332 - -
Trre15g01447 333 FunFam E3 ubiquitin-protein ligase SINAT5-like 43 136 - -
Trre15g01447 333 CDD RING-HC_SIAHs 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01447 Trre-Chr15 11307367 11309215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01447 36 333 C3H Transcription Factor Family AT2G41980 64.590 2.72e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01447 K04506 - gmx:100781022 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01447 15 11307367 11309215 Trre15g01447 15 11307367 11309215 ECH
Trre5g00385 5 2410632 2412300 Trre15g01447 15 11307367 11309215 PCT