Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01446 ATGGCATTGTCAACACTTTCAAAAACTTTTGACAAAATTTCTGAAATTAATGATTCAAAATCTGCTTGGAATGTCAAAGCAAAAGTTATTAGATTGTGGGTTGTGAAAGACTTCAACAGAAATGATTTACCCTTTTCAGTTGAAATGGTTTTAATGGATGCTGAGGGAGATCGAATTCACTGTTCAGTTAGAAAAACATTATTGTACAAGTTTGCAGAACATATCAAAGAGGGCAGAGTCTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAACCTACAAAACTACCAAACATGAATACAAACTAACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGACCAAACAAACTCACCAACCTATCTCCTTTTAAATTTGTTCCTATTGGGGAAGTCATTAATGGCAGCTATGACAGCGATTACTTAGTTGATGTAATTGGAATGCTGACCGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAATGCACTCTTTTTGGTTCTTATGTTGATGAGCTCAACAATTTTCTTTCCTCCGGCGAAACACAAAATGCTGCTGTTATCATCATGCTTGGAAAGGTCAAACTATTTCAAGTCATTGATATGGAATGTGTAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTTTTTTACAATCCTGTCAATGATGATGTCACTTCCTTAAGGACTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCACAACCTAGAGTTGATCCTCTCCAAGAATTTCTCTATTCCACTCCTAGGAACAATATCCAAGGTCTTCTTAATTGTGAAGAGGATGCTATTTTTGTTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTCTATACGGCATGTGCATGCAACAAAAGTGTGTATCCAGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAGCATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCGTGATGCTGCAATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGCAGTCGTGACACCAGGGCTGCACCTACTGTTCTTCCTGCTGAAATTAAAGCATTGGTCAATTCCACATATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGCCTTCTTTCCGCGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGCATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATGATACTCAAATTGGATCTTCAGCAAACTATCTTGAGACTAACAATGTTGAGCCACTAACAGCAAGTTCTACAAAGGAGAAAGAGACAAAATTGGATTGTGCAAAGTTGGGCATCTCACAAGACTTGATGCCATCATTCTCTGAAGCTGTCATTGATGTTGATGACATCCCAAGTCCCAAAAAAATTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAGGGCTTCACCCAATGATGAAACCAAAAGTGAAGACATGAACCTTCCAATTAAGCTTCTCAAAAGGGCAATTAAGATTGAAAAGATCTAA 1728 0.3814 MALSTLSKTFDKISEINDSKSAWNVKAKVIRLWVVKDFNRNDLPFSVEMVLMDAEGDRIHCSVRKTLLYKFAEHIKEGRVYSFENLDSATNGGTYKTTKHEYKLTFQFGSKVTPLGPNKLTNLSPFKFVPIGEVINGSYDSDYLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNAAVIIMLGKVKLFQVIDMECVEKLHIQNCLNCTKVFYNPVNDDVTSLRTRMVQNLDTPSPLILTQINAQPRVDPLQEFLYSTPRNNIQGLLNCEEDAIFVVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDRDAAMLFNKSCAEVLRSRDTRAAPTVLPAEIKALVNSTYLFKVECKAPVSHRFEPSFRVRKICTDMILINQFKSKWEHEESTFAKNANEMNSLSALHDTQIGSSANYLETNNVEPLTASSTKEKETKLDCAKLGISQDLMPSFSEAVIDVDDIPSPKKIDAKGKAKMDNHTTKGKRASPNDETKSEDMNLPIKLLKRAIKIEKI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01446 575 CDD RPA1_DBD_A_like 25 112 - -
Trre15g01446 575 Gene3D - 10 116 IPR012340 -
Trre15g01446 575 PANTHER OS03G0429900 PROTEIN 12 483 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g01446 575 CDD RPA1_DBD_C 298 417 IPR047192 -
Trre15g01446 575 Pfam Replication factor-A C terminal domain 303 418 IPR013955 -
Trre15g01446 575 Gene3D - 284 442 IPR012340 -
Trre15g01446 575 MobiDBLite consensus disorder prediction 529 559 - -
Trre15g01446 575 SUPERFAMILY Nucleic acid-binding proteins 126 218 IPR012340 -
Trre15g01446 575 SUPERFAMILY Nucleic acid-binding proteins 298 441 IPR012340 -
Trre15g01446 575 SUPERFAMILY Nucleic acid-binding proteins 10 115 IPR012340 -
Trre15g01446 575 CDD RPA1_DBD_B_like 146 255 - -
Trre15g01446 575 Pfam Domain of unknown function DUF223 48 144 IPR003871 -
Trre15g01446 575 Gene3D - 123 261 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01446 Trre-Chr15 11294412 11297160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01446 2 414 Core DNA Replication Machinery Family AT5G08020 21.163 2.35e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01446 - - tpra:123915045 534.643