Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01445 ATGGCATTGTCAACACTTTCAAAAACTTTTGACAAAATTTCTGAAATTAATGATTCAAAATCTGCTTGGAATGTCAAAGCAAAAGTTATTAGATTGTGGGTTGTGAAAGACTTCAACAGAAATGATTTACCCTTTTCAGTTGAAATGGTTTTAATGGATGCTGAGGGAGATCGAATTCACTGTTCAGTTAGAAAAACATTATTGTACAAGTTTGCAGAACATATCAAAGAGGGCAGAGTCTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAACCTACAAAACTACCAAACATGAATACAAACTAACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGACCAAACAAACTCACCAACCTATCTCCTTTTAAATTTGTTCCTATTGGGGAAGTCATTAATGGCAGCTATGACAGCGATTACTTAGTTGATGTAATTGGAATGCTGACCGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAATGCACTCTTTTTGGTTCTTATGTTGATGAGCTCAACAATTTTCTTTCCTCCGGCGAAACACAAAATGCTGCTGTTATCATCATGCTTGGAAAGGTCAAACTATTTCAAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTTTTTTACAATCCTGTCAATGATGATGTCACTTCCTTAAGGACTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCACAACCTAGAGTTGATCCTCTCCAAGAATTTCTCTATTCCACTCCTAGGAACAATATCCAAGGTCTTCTTAATTGTGAAGAGGATGCTATTTTTGTTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTCTATACGGCATGTGCATGCAACAAAAGTGTGTATCCAGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAGCATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCGTGATGCTGCAATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGCAGTCGTGACACCAGGGCTGCACCTACTGTTCTTCCTGCTGAAATTAAAGCATTGGTCAATTCCACATATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGCCTTCTTTCCGCGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGCATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATGATACTCAAATTGGATCTTCAGCAAACTATCTTGAGACTAACAATGTTGAGCCACTAACAGCAAGTTCTACAAAGGAGAAAGAGACAAAATTGGATTGTGCAAAGTTGGGCATCTCACAAGACTTGATGCCATCATTCTCTGAAGCTGTCATTGATGTTGATGACATCCCAAGTCCCAAAAAAATTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAGGGCTTCACCCAATGATGAAACCAAAAGTGAAGACATGAACCTTCCAATTAAGCTTCTCAAAAGGGCAATTAAGATTGAAAAGATCTAA 1707 0.382 MALSTLSKTFDKISEINDSKSAWNVKAKVIRLWVVKDFNRNDLPFSVEMVLMDAEGDRIHCSVRKTLLYKFAEHIKEGRVYSFENLDSATNGGTYKTTKHEYKLTFQFGSKVTPLGPNKLTNLSPFKFVPIGEVINGSYDSDYLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNAAVIIMLGKVKLFQEKLHIQNCLNCTKVFYNPVNDDVTSLRTRMVQNLDTPSPLILTQINAQPRVDPLQEFLYSTPRNNIQGLLNCEEDAIFVVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDRDAAMLFNKSCAEVLRSRDTRAAPTVLPAEIKALVNSTYLFKVECKAPVSHRFEPSFRVRKICTDMILINQFKSKWEHEESTFAKNANEMNSLSALHDTQIGSSANYLETNNVEPLTASSTKEKETKLDCAKLGISQDLMPSFSEAVIDVDDIPSPKKIDAKGKAKMDNHTTKGKRASPNDETKSEDMNLPIKLLKRAIKIEKI 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01445 568 MobiDBLite consensus disorder prediction 522 552 - -
Trre15g01445 568 CDD RPA1_DBD_A_like 25 112 - -
Trre15g01445 568 Gene3D - 123 254 IPR012340 -
Trre15g01445 568 Gene3D - 277 435 IPR012340 -
Trre15g01445 568 Pfam Domain of unknown function DUF223 48 144 IPR003871 -
Trre15g01445 568 SUPERFAMILY Nucleic acid-binding proteins 126 246 IPR012340 -
Trre15g01445 568 CDD RPA1_DBD_B_like 146 248 - -
Trre15g01445 568 SUPERFAMILY Nucleic acid-binding proteins 10 115 IPR012340 -
Trre15g01445 568 CDD RPA1_DBD_C 291 410 IPR047192 -
Trre15g01445 568 Gene3D - 10 116 IPR012340 -
Trre15g01445 568 Pfam Replication factor-A C terminal domain 296 411 IPR013955 -
Trre15g01445 568 PANTHER OS03G0429900 PROTEIN 12 490 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g01445 568 SUPERFAMILY Nucleic acid-binding proteins 291 434 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01445 Trre-Chr15 11294412 11297160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01445 2 407 Core DNA Replication Machinery Family AT5G08020 21.513 2.61e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01445 - - tpra:123915045 541.576