Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01420 ATGGCTTCATCTTCTTCTTCTTCTGTTATCAAAGATGCAAAAGTTCTCATGGTTGGTGCTGGTGGAATTGGATGCGAGCTTCTCAAAACTCTCGCTCTCTCTGGTTTCTCTGATATACACATCATTGACATGGACACTATAGAAGTCAGTAACTTGAACAGACAATTTTTGTTTCGACAATCCCATGTTGGGCAGTCCAAGGCTAAAGTTGCTAGGGACGCTGTTTTAAAATTTAGGCCCAAGATAAACATCACATCATATCACGCAAATGTCAAAGATCCTGATTTCAATGTGGACTTCTTTAAGAAATTTAACGTTGTTCTGAATGGACTTGACAATCTTGATGCACGCCGACATGTGAATCGCCTGTGCTTGGCAGCTGATGTTCCTTTAGTTGAAAGTGGAACTACTGGGTTCCTTGGCCAGGTTACAGTGCATGTCAAAGGAAGAACAGAGTGCTATGAGTGTCAGCCTAAACCAGCTCCGAAGACGTATCCAGTCTGTACTATCACAAGTACTCCATCAAAGTTTGTTCACTGTATTGTGTGGGCAAAGGACCTACTATTTACCAAGTTATTTGGGGACAAGAATCAAGACAATGATTTAAATGTTCGCTCTAGTGATGCTGCCAGCTCATCAAAAAATGTAGATGATATATTTGAACATAGCAAAGATGAAGATATTGCTCAATATGGAAGGAAAATATTTGATCATGTATTTGGGTATAATATTGAATTAGCTTTGTCCAATGAGGAGACATGGAAAAATCGAAACAGACCTAAACCTATATACAGCAAGGATGTCCTGTCTGATGAATTGGCTAAACAAAATGGAAATGTGGACAATGATAATGCTTGTGGTGATGGGTTATCGGTTTCTGCCATGTCATCTTTGGGCATGAAGAACCCACAAGATGTCTGGAGTCTTGGAGAAAATTCTAGAATACTGCTCGAAGCACTGAGACTATTTTTCACGAAAAGAGAAAAGGAGATCGGCAATCTGAGCTTTGATAAAGATGACCAGTTGGCTGTAGAATTTGTTACTGCAGCTGCAAACATACGAGCTGCTTCATTTGGGATACCTCTACACAGTCTTTTTGAAGCTAAAGGAATTGCTGGTAACATTGTGCATGCTGTGGCGACAACAAATGCTGTTATTGCTGGTTTGATTGTCATTGAAGCAATTAAGGTGCTGAAAAATGACATTAAAAGTTATAGAATGACATACTGTCTGGAACACCCATCAAGAAACCTGCTACTTATGCCAGTGGAGCCATTTGAACCTAACAAATCCTGTTATGTTTGCTCTGAGAGTCCTGTATTGCTCGAAATAAACACAAACCGTTCAAAGTTGAAGGATGTTGTTGAAAAGATCATCAAGGCTAAGCTTGGGATGAGCCTTCCACTTATTATGAATGCTTCAAACCTCCTCTATGAAGCTGGTGATATTGAAGAAGACATGGTTGCAATTTATAATGCCAACCTTGAAAAGGTTCTAGCTGAGCTTCCTTCTCCTGTAACCGGTGGTACAATGCTTGCAGTAGAGGATTTTCAACAGGAATTGAAGTGCAATATTAACATAAAGCACAGAGAGGAATTTGATGAAGAGAAAGAACCCGATGGGATGGTTCTCTCAGGATGGACTCAACCAGAGAATAAAGAGGAATCTGTTAGTAACGGTGCAAACACCTCAGACACACCAGCAACAGCTGTAGAATCTGAAAATGATGATGATATTGGTATAGTTTCTCCGGTGAAGAAAAGAAAGCTTCCTGATGATTCTGATAAGTCGAATACTGCTGATGACACAAGGCATCACAAGCAATTGCAAGTAATCAATGACGAAGATGATCTTGTTATGCTTGACGGGAATTTAGACGGGTTTAAAAAGAGAAGAGTGTCATAG 1905 0.3995 MASSSSSSVIKDAKVLMVGAGGIGCELLKTLALSGFSDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPKINITSYHANVKDPDFNVDFFKKFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFTKLFGDKNQDNDLNVRSSDAASSSKNVDDIFEHSKDEDIAQYGRKIFDHVFGYNIELALSNEETWKNRNRPKPIYSKDVLSDELAKQNGNVDNDNACGDGLSVSAMSSLGMKNPQDVWSLGENSRILLEALRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLHSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLKNDIKSYRMTYCLEHPSRNLLLMPVEPFEPNKSCYVCSESPVLLEINTNRSKLKDVVEKIIKAKLGMSLPLIMNASNLLYEAGDIEEDMVAIYNANLEKVLAELPSPVTGGTMLAVEDFQQELKCNINIKHREEFDEEKEPDGMVLSGWTQPENKEESVSNGANTSDTPATAVESENDDDIGIVSPVKKRKLPDDSDKSNTADDTRHHKQLQVINDEDDLVMLDGNLDGFKKRRVS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01420 634 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 10 483 IPR035985 GO:0008641
Trre15g01420 634 Gene3D - 436 583 - -
Trre15g01420 634 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 10 486 IPR045886 -
Trre15g01420 634 PIRSF SUMO_E1B 1 614 IPR030661 GO:0016925|GO:0019948
Trre15g01420 634 Pfam Ubiquitin-activating enzyme, SCCH domain 318 369 IPR019572 -
Trre15g01420 634 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 442 533 IPR028077 -
Trre15g01420 634 FunFam SUMO-activating enzyme subunit 163 374 - -
Trre15g01420 634 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 163 374 IPR023318 -
Trre15g01420 634 FunFam SUMO-activating enzyme subunit 2 9 185 - -
Trre15g01420 634 FunFam SUMO-activating enzyme subunit 377 410 - -
Trre15g01420 634 MobiDBLite consensus disorder prediction 532 611 - -
Trre15g01420 634 CDD Uba2_SUMO 14 435 - -
Trre15g01420 634 FunFam SUMO-activating enzyme subunit 2 1 108 - -
Trre15g01420 634 Pfam ThiF family 9 433 IPR000594 -
Trre15g01420 634 MobiDBLite consensus disorder prediction 579 611 - -
Trre15g01420 634 Gene3D - 2 108 IPR042449 -
Trre15g01420 634 MobiDBLite consensus disorder prediction 549 570 - -
Trre15g01420 634 FunFam SUMO-activating enzyme subunit 436 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01420 Trre-Chr15 11082610 11088224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01420 334 428 EF-hand Containing Proteins AT2G30110 35.000 6.98e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01420 K10685 - gmx:100779926 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01420 15 11082610 11088224 Trre15g01420 15 11082610 11088224 ECH