Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01419 ATGGAGTCACCTGTTGATATCTTACCTGCTAAACGCCCCGCTCCAACTGGAATTTCATCTGAGGAGGGATGCAAAAGACGTAAGTTATCAAGTGATAGTTTGCCCAATTCGGCAAATGCGAATGTTGTAGATTACACAAATCCGTATGCAATTTCAGAGGCTCTAAGTCGTTTAGAGAGTGGAAAATTTGGAAGTGTCACAAAGGATATTGAAGCCCTTATAACCCGAAAAATGAAAATATTGGGCCCTTACTTTGCAAAGTATCCTACGCTTGTTGATAAGTTATTGAAGGTGGTGGTGATAAATCATGATGAAGAAACTCACAACTCGGAAAATAAAAAAGTTACTGGTATGTCACATCAAAATGTCATTGATTTGGATGAAAAGGATGTTTTGGCACCAAAAAGAGAAAAGGATGTACCTGCCACACCATGTCCTGTTGTTATCATTGATTCAGACGATGAAGATGATGCGGGTCAAAATTCATTTCATCCATTTCATGAAGTTGTGTTGCCGCAACCAGTTCCGTCTCCTGCATTAAGAATGACTGGGTATCATGCTTCCAATGCTTACCATGGAGAAAGTGCAGATCTAAAATTTGATTCAAGTCTGCCTCCTTATGCTTACCATGGAGACAGTGCAGATAAAAAATTTGAAACAAGCCTGCCTCCTAAAGATAACCCAAGGAAAGATAAAGGTGTTTATGTTGGTGTACATGAGGAAGATGATCAGGCTGATGCTGAAGATGACGGGCTAGAAGATATTTGGAGAGAAATGTCCATGGCAATAGAAACTTCTAAAGACATTTCTGCAGATCCTCAACCTGAAGAAGAAGAAGAGGAAGAAGATGCTGACTGTGATCATTCTTTCGTTTTAAAAGACGATCTTGGATATGTTTGCCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAAAAGGAGCACAAGGACTTATATGTCTGATTCGTCGAATGCCAAAGATAAAGTTGATGCGTTTGGTGTGAAGATTAAAGAAGATGATCTTGTGGTAACTGATATATCAGCACATCCCCGGCATGCAAATCAAATGAAACCGCACCAAGTCGAAGGCTTCAACTTTCTTGTCAGAAACTTGGCGGGGGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTAATGCCAGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCAACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATATTCCACTTTATGACCTATACACTGTGAAGGCAGACAGTAGACCTCAACAACTGGAGGTGTTAAAACAATGGATGGATAACAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCCATTGTGATTGATAATAGTAATAACAATGCATCGATATCTTGCCGAGAGATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACTGATATGGTGCAGTCCCTTGCCAAAGTACTAACACCAAGGAAAGTTGTACTGTCTGGAACCCTTTATCAAAATCATGTCAGGGAGGTATTCAACGTTCTCAATCTGGTGCGGCCGAAGTTTTTAAAGATGGAAACATCTAAGCCTATTGTCCGGCGCATTCAGAGTAGGATCCATATAAGTGGCGTGAAACGCTTTGATGAATTGGTCGAGAATACGTTGCAGAAGGACCCAGATTTTAAAAGGAAAGTGGCTGTAATTCATGATTTGCGTGAGATGACCAGCAAAGTTCTTCACTACTATAAAGGAGATTTTCTTGATGAACTTCCTGGCCTTGTAGATTTCACTGTGGTGCTCAAACTTACACCTAGACAGAAGCATGAAGTTGAGAAAGTAAGGAAGATATTAAGAAAGTTCAAAATGTCTGCTGTAGGCAGTGCAGTGTATTTGCACCCTAAGTTGAAGCCGCTTGCAGATAAATGCGTTGAAAAATCGGTTCTTCAAAAACAAAAATGCGTTGAGAAAACCATATCGGATAATATAATGGATGATTTTATAGCAAACATAGATCTTAGAGATGGGGTCAAATCAAAATTCTTTCGCAATATGCTGAATCTATGTGAATCAGCTGGGGAGAAACTTTTGGTGTTCAGTCAATATCTCTTGCCTTTGAAATATTTGGAAAGGTTAGCTGTGAAGTGGAAGGGATGGGGTGTTGGAAAAGAAATCTTTGTGATTTCAGGAGATTCAACCGCTGAACAAAGGGAGTATTCCATGGACAAGTTTAACAATACACCCGAGGCAAAAATATTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATTTAAACCCATCTGTTACTCGTCAAGCTATTGGCCGTGCCTTCCGACCAGGCCAGAAAAGGAAAGTCTTTGTGTACAGATTGGTAGCTGCTGATTCTCCAGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCTTTTGAAGTTGAGACTCTTGATGTGAAGGAATGTGGTGATCTGTTTCTGGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGTATAAAAGGTAG 2724 0.4016 MESPVDILPAKRPAPTGISSEEGCKRRKLSSDSLPNSANANVVDYTNPYAISEALSRLESGKFGSVTKDIEALITRKMKILGPYFAKYPTLVDKLLKVVVINHDEETHNSENKKVTGMSHQNVIDLDEKDVLAPKREKDVPATPCPVVIIDSDDEDDAGQNSFHPFHEVVLPQPVPSPALRMTGYHASNAYHGESADLKFDSSLPPYAYHGDSADKKFETSLPPKDNPRKDKGVYVGVHEEDDQADAEDDGLEDIWREMSMAIETSKDISADPQPEEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSDSSNAKDKVDAFGVKIKEDDLVVTDISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRPQQLEVLKQWMDNKSILFLGYKQFSSIVIDNSNNNASISCREILLKVPSILILDEGHTPRNENTDMVQSLAKVLTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQSRIHISGVKRFDELVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKHEVEKVRKILRKFKMSAVGSAVYLHPKLKPLADKCVEKSVLQKQKCVEKTISDNIMDDFIANIDLRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAVKWKGWGVGKEIFVISGDSTAEQREYSMDKFNNTPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLVAADSPEEEDHNTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALYKR 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01419 907 MobiDBLite consensus disorder prediction 1 37 - -
Trre15g01419 907 Gene3D - 628 894 IPR027417 -
Trre15g01419 907 MobiDBLite consensus disorder prediction 266 285 - -
Trre15g01419 907 Pfam Helicase conserved C-terminal domain 722 830 IPR001650 -
Trre15g01419 907 MobiDBLite consensus disorder prediction 212 232 - -
Trre15g01419 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 577 IPR027417 -
Trre15g01419 907 SMART helicmild6 746 831 IPR001650 -
Trre15g01419 907 CDD SF2_C_SNF 714 842 - -
Trre15g01419 907 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 192 906 IPR044567 GO:0080188
Trre15g01419 907 Gene3D - 332 593 IPR038718 -
Trre15g01419 907 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 717 885 IPR001650 -
Trre15g01419 907 Pfam SNF2-related domain 385 594 IPR000330 GO:0005524|GO:0140658
Trre15g01419 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 558 IPR014001 -
Trre15g01419 907 MobiDBLite consensus disorder prediction 211 232 - -
Trre15g01419 907 SMART ultradead3 361 571 IPR014001 -
Trre15g01419 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 869 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01419 Trre-Chr15 11070638 11077037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01419 728 859 RAD5 or RAD16-like Gene Family AT5G43530 37.121 7.62e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre15g01419 SNF2_N 5.4e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01419 K10875 - gmx:100780454 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01419 15 11070638 11077037 Trre15g01419 15 11070638 11077037 ECH