Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01418 ATGGCGGAGCATGTAACCGCCACCGTGAACCACGGCGAACAACAACCAAAACAGAACCAACACCACAACAACAACGAAGATAACAAGAAAGAGAAGATTTCAGATCCAGAGCTATTCTGCTGTCTTCTTCAGCCTCTAACGCCCGACGCTGATCTCCGATACATTGGCATTCGTCGCCTCCTCCTTCATCAGAAGGCCGAAGCTGGAATTCTCCGTCGTAGGGATTGGCGATGCAATGGGAAAACTTACGTCGCGTACCGGAATTACATATGCAGGCCTAAGAACTGCGAAAGTCTACGAGCCCCAAGCCTTCAAAGTACTCCAGGAAACAGTGGTCGATGGATTCCATCTTCAAGTCCACTCCCCCGTTGGTCTGAGGTGGACAGCTGGGGTTCTGGGAGGGATGTCCAAGTTGCAAATTCTGTATCCAATCATAGATCAAGTTTTGGCTCTGGCTCAACTGCAAGTGATTCTGATCGTCCACGGCATCGCGGGGTTGAGCATGCCTATTCCTTTGTAGGAATGCATTGCATCTTTGACCAGTGCAAAGCCTCTGTTACGGTGTTAAAGTTTGGGCACATGAGTTCTGACCTACTTGCTTATGGGGCATCAGATGGAACCTTGACTGTGTGCAGTGTTTCGGAGAAACCTTCAGTCATCAAACAATTAAATGGCCATTCCAAAGATGTCACAGATTTTGATTTTACATCAAACAATCAGTACATTGCATCGTCTTCGTTGGATAAAACTGTGAGAGTATGGGAGATAGAAAAAGGCATTTGCATACGGGTGATATATGGAGTTTCTTCACAACTGTGTATCCGTTTCCACCCTGTAAATAATAACTTCCTTTCTGTTGGCAATGAAAACAAAGAAATCAATGTGTTCAATTTTAGCACTGGAAGGATAATTAACAAGTCGGCATTTGACGCTGAAGTTACCGCTATGGACCACGATCATACTGGTCATCTCATATTTTGTGGAGATGCGCAGGGATGTATATACTCTGTAAATATGAACTCCCACACAGGTGTATTATCCCGCTCTCATCGTCATCGAAGTAGCAGCAAACACAGATCTCCAGTAACAACAGTACAGTATAGGAGTTTCTCTCTGCTGGCTCGAGGACCTGTCTTGCTGACCTGTACTCAGGATGGAAATCTGTCTTTCTTCAGTGTGGCTTTGGAGATAAAAGGTTATTTAACTCTTCGTTGCTCGCTCAAATTAACTCCTCGGATACACAAAATTCAAGCTTCTTTCTGCCCCCTTCTTTCTCTTGAAAAAGGAGAATTCATTGTTGCTGGCAGTGAGGACTCAAATGTCTATTTCTATGATTTAACAAAGCCAAAGCATACATGTGTAAACAAGTTACAGGGTCATCGGTTTCCTGTGATGGGGATTGCTTGGAACCATGGAGAAAACTTTTTGGCTTCCTCTGATTTTTACGGCATAGTAATTGTTTGGAAGAGAGAGAGAACAAATCAGAACAAGAATACATAG 1500 0.4407 MAEHVTATVNHGEQQPKQNQHHNNNEDNKKEKISDPELFCCLLQPLTPDADLRYIGIRRLLLHQKAEAGILRRRDWRCNGKTYVAYRNYICRPKNCESLRAPSLQSTPGNSGRWIPSSSPLPRWSEVDSWGSGRDVQVANSVSNHRSSFGSGSTASDSDRPRHRGVEHAYSFVGMHCIFDQCKASVTVLKFGHMSSDLLAYGASDGTLTVCSVSEKPSVIKQLNGHSKDVTDFDFTSNNQYIASSSLDKTVRVWEIEKGICIRVIYGVSSQLCIRFHPVNNNFLSVGNENKEINVFNFSTGRIINKSAFDAEVTAMDHDHTGHLIFCGDAQGCIYSVNMNSHTGVLSRSHRHRSSSKHRSPVTTVQYRSFSLLARGPVLLTCTQDGNLSFFSVALEIKGYLTLRCSLKLTPRIHKIQASFCPLLSLEKGEFIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMGIAWNHGENFLASSDFYGIVIVWKRERTNQNKNT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01418 499 Gene3D - 274 499 IPR015943 GO:0005515
Trre15g01418 499 SMART WD40_4 216 255 IPR001680 GO:0005515
Trre15g01418 499 SMART WD40_4 172 212 IPR001680 GO:0005515
Trre15g01418 499 SMART WD40_4 409 445 IPR001680 GO:0005515
Trre15g01418 499 SMART WD40_4 348 392 IPR001680 GO:0005515
Trre15g01418 499 SMART WD40_4 300 338 IPR001680 GO:0005515
Trre15g01418 499 SMART WD40_4 450 489 IPR001680 GO:0005515
Trre15g01418 499 SMART WD40_4 258 297 IPR001680 GO:0005515
Trre15g01418 499 SUPERFAMILY WD40 repeat-like 178 490 IPR036322 GO:0005515
Trre15g01418 499 MobiDBLite consensus disorder prediction 101 120 - -
Trre15g01418 499 PANTHER WD REPEAT PROTEIN 26-RELATED 169 494 - -
Trre15g01418 499 Gene3D - 170 273 IPR015943 GO:0005515
Trre15g01418 499 ProSitePatterns Trp-Asp (WD) repeats signature. 242 256 IPR019775 -
Trre15g01418 499 MobiDBLite consensus disorder prediction 141 162 - -
Trre15g01418 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
Trre15g01418 499 Pfam WD domain, G-beta repeat 220 254 IPR001680 GO:0005515
Trre15g01418 499 Pfam WD domain, G-beta repeat 453 489 IPR001680 GO:0005515
Trre15g01418 499 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 498 IPR001680 GO:0005515
Trre15g01418 499 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 259 - -
Trre15g01418 499 MobiDBLite consensus disorder prediction 1 30 - -
Trre15g01418 499 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01418 Trre-Chr15 11060944 11068272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01418 195 334 Miscellaneous Gene Families AT5G08390 24.648 3.92e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01418 K24739 - gmx:100792346 844.728