Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01414 ATGAGCAGTACTAACAGATTAAACTCCTTGGGAAGGTACCGTGGTAATCAAGTTTTCACCTATAGCAACACTTGTAGTTCTATCCGTTATCATAAACCCATTTGTGTAAAGATCAAATCTGTAGCACAAAGAGGAAGAGGGATTGTGAAGGTGGAACCAAAACCAAGAAAAGGTTTCACTTCAAAAGTTGTTGATTTGTTGGAGAAGATTATTGTCAAGTTCTTTTATGATTCTTCACTTTCTCATCATTGGATTGATGGTAATTTTGCACCTGTTCAAGATGAGACACCTCCTGTTAAGGATCTTCCTGTTAAAGGGTACCTTCCGGATTGCTTGAATGGAGAGTTTCTCAGGGTGGGACCGAATCCGAAGTTTCCACCGGTAGCTGGATATCATTGGTTCGATGGAGATGGAATGATTCACGGTTTGCGCATCAAAGATGGAAAAGCTACATATCTTTCCCGTTTCGTGAGAACTTCTCGTCTTAAACAAGAAGAATACTTCGGAGGCTGTAAATTTATGAAGATTGGAGATGTCAAGGGTCTACTTGGACTTTTAATGGTTACCATACAAATTTTGAGAGAAAAATTGAAAATACTTGATGTTTCTTATGGAACTGGAACAGCTAATACAAGTCTTGTATATCATAATGGGAAGCTTCTAGCGCTCTCAGAACGAGATAAACCTTATGCTATTAAAGTTTTTGAAGATGGCGATTTGCATACACTTGGAATGCTAGATTATGACAAGAGACTGGACCATTATTTCACTGCTCATCCAAAACTTGATCCTTTTACTGGGGAGATGTTTACATTTGGATATTCGCAAACACCGCCATATATCACATACAGAGTAATTTCAAAGGATGGTTATATGCATGATCCTGTTCCCATAACAATATCATATCCCATCATGATGCATGACTTTGCCATAACCGAGAATTACGCAATTTTTATGGATCTTCCTGTATACTTTAGGCCAAAGGAAATGGTGAAGAATCATAAACTCATATTCTCTTTTGATTCAACCAAGAATGCTCGTTTCGGTGTCCTACCTCGCTATGCTAAAGATGATAAGCTCATAAGATGGTTTGAATTACCAAATTGCTTCATATTCCATAATGCTAATGCTTGGGAGGAGGAGGATGAAGTTGTTTTGATCACATGCCGATTGAAGAATCCGGACTTGGACATGATCAGCGAGAATATCAAGGATAAGCTTGAAAATTTCTCAAATGAGCTGTATGAAATGAGGTTTAACATGAAAACTGGTAAAGCTTCTCAAAAGAAACTATCGACATTTTCTGTAGATTTTCCTAGGGTGAACGAATGCTACACTGGCAGGAAACAAAAGTATGTATATGGAACCATATTAGACAGCAGTGCAACTGGGATTATTAAATTTGATTTGAATGTCGAACCTGATTTTGGCAACACAAAGCTTGAAGTCGGAGGAAATGTTTGTGGTCTCTATGGCTTGGGACCAGGAACATTTTGCTCGGATGCTATCTATGTCCCTCGTGTACCTGGAACCAATTCCGAAGAAGATGATGGATACTTGATCTTTTATGTACATGATGAGAATACAAGGAAATCATCTGTGAACGTCATAGACGCAAAAACAATGTCAGCAGATCCTATTGCATTTGTAGAATTGCCTCGAAGAGTTCCATATAGTTTCCATTCCTTCTTTCTGACAGAGGAACAACTGCAAGAACAAGCCAAACTGTAA 1731 0.3842 MSSTNRLNSLGRYRGNQVFTYSNTCSSIRYHKPICVKIKSVAQRGRGIVKVEPKPRKGFTSKVVDLLEKIIVKFFYDSSLSHHWIDGNFAPVQDETPPVKDLPVKGYLPDCLNGEFLRVGPNPKFPPVAGYHWFDGDGMIHGLRIKDGKATYLSRFVRTSRLKQEEYFGGCKFMKIGDVKGLLGLLMVTIQILREKLKILDVSYGTGTANTSLVYHNGKLLALSERDKPYAIKVFEDGDLHTLGMLDYDKRLDHYFTAHPKLDPFTGEMFTFGYSQTPPYITYRVISKDGYMHDPVPITISYPIMMHDFAITENYAIFMDLPVYFRPKEMVKNHKLIFSFDSTKNARFGVLPRYAKDDKLIRWFELPNCFIFHNANAWEEEDEVVLITCRLKNPDLDMISENIKDKLENFSNELYEMRFNMKTGKASQKKLSTFSVDFPRVNECYTGRKQKYVYGTILDSSATGIIKFDLNVEPDFGNTKLEVGGNVCGLYGLGPGTFCSDAIYVPRVPGTNSEEDDGYLIFYVHDENTRKSSVNVIDAKTMSADPIAFVELPRRVPYSFHSFFLTEEQLQEQAKL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01414 576 PANTHER BETA-CAROTENE DIOXYGENASE 85 566 IPR004294 GO:0016702
Trre15g01414 576 Pfam Retinal pigment epithelial membrane protein 89 565 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01414 Trre-Chr15 11021629 11026023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01414 K00465 - gmx:100789210 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01414 15 11021629 11026023 Trre15g01414 15 11021629 11026023 ECH