Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01413 ATGCCAGGGAAACCTGAAACTGATGATTTAGGAGTAAAGCATAGTGAGTTGCCATCATCTATTTACTCTCATCACCCTTGGTGGCTTCAAAATGCCTCCAAATCATCTTCAGCTGATCAGCTAAATGGTTCAATCATGAATGGTGTCACACATTTGGTTTCACCATCACTTTCTGTAACTGATAAGTCAGGTGGGGTCATTGCCGAGGAGCACAGTAACATCAAACAGGCCCTATCGTCTACTCCATTTACCATGGACAAACATTTTGATGGTCATTCGATTGTTTTAACATCTCATTCAAATGCAGAGTTTGGTCAAATCTTGTCTCCTTATGGACAGCAAGTTATGATGAACCCCCAGCTATACCAAATGCATCATGCTAGAGTGCTTTTGCCACTTGAAATGGAAGAGGAACCTGTCTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGACGAAGACAGTCGCGCGCCAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTTCACGAATCCCGTCACCTACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGCTTTCTCAATACAAAGAAGCTCGAACATAACGATTCTAATGCCGCTCTAGAAAAAGATAACAATACTGGTACAACATTGGTTGCCAACAATGAGAATCAACAACGCTCAACGAATGCATCGCAGTCCATACACAAAATGCAGGGTTTCAACATCGGTTACCATGGTGGAAATGGTTTTACAGCACTATGTCATTCACAGGCAAATGGAAAACAGGAGAGTGATTTCTTTGGTAAAGAGAGGGAATCAAATGGTGGTATAAAATGA 840 0.4167 MPGKPETDDLGVKHSELPSSIYSHHPWWLQNASKSSSADQLNGSIMNGVTHLVSPSLSVTDKSGGVIAEEHSNIKQALSSTPFTMDKHFDGHSIVLTSHSNAEFGQILSPYGQQVMMNPQLYQMHHARVLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEHNDSNAALEKDNNTGTTLVANNENQQRSTNASQSIHKMQGFNIGYHGGNGFTALCHSQANGKQESDFFGKERESNGGIK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01413 279 MobiDBLite consensus disorder prediction 206 232 - -
Trre15g01413 279 ProSitePatterns NF-YA/HAP2 subunit signature. 141 161 IPR018362 GO:0003677|GO:0016602
Trre15g01413 279 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 138 193 IPR001289 GO:0003700|GO:0006355
Trre15g01413 279 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 46 234 IPR001289 GO:0003700|GO:0006355
Trre15g01413 279 PRINTS CCAAT-binding transcription factor subunit B signature 170 193 IPR001289 GO:0003700|GO:0006355
Trre15g01413 279 PRINTS CCAAT-binding transcription factor subunit B signature 139 161 IPR001289 GO:0003700|GO:0006355
Trre15g01413 279 MobiDBLite consensus disorder prediction 208 232 - -
Trre15g01413 279 Gene3D - 136 197 - -
Trre15g01413 279 SMART cbf3 135 196 IPR001289 GO:0003700|GO:0006355
Trre15g01413 279 ProSiteProfiles NF-YA/HAP2 family profile. 136 196 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01413 Trre-Chr15 11018771 11020869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01413 2 225 CCAAT-HAP2 Transcription Factor Family AT5G12840 35.361 3.93e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre15g01413 CBFB_NFYA 7.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01413 K08064 - gmx:100782085 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01413 15 11018771 11020869 Trre15g01413 15 11018771 11020869 ECH