Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01407 ATGAAAACACTAGCAGTTAATACTGAAGATTCTTTTTCCAGTTTATTGGAGTTTGCTTCTAACAATGACATTGAAGGTTTTAAGTTGCTTTTAGATAAAGAAGGAGCTTCTTCAATTAACAAGGTGGGGATTTGGTATGGTCGGCAATATGGGTCTAAGCAGATTGTTCTTGACCATAAAACATCTTTGATGATCGCTGCTACTTATGGTAGTCTTGATGTTATGAAGCTTATACTTTTGTATCCAGAAGCCGATGTGAATTTTGCTTGTGGGGTGAGTAAAATGACTGCCCTTCACTGTGCTGCTTCTGGTGGGACTGTTAATGTGGTTGATGCTGTGAGACTTCTTATATTGGCTGGTGCTGATGTTAATTGTGCCGACGCCAATGGAAATCGGCCTGTTGATGTCATTGTTGTTCCTCCCATGCTTCAAAGCATGAAAGCAGTTCTTGAGGAACTTCTTTTGGATAATGCCTCTGATAATGGCTCTATCGGTGACTTCTCTGTTTCGGTGTCTGTTAATTCTTCTAGTTCTGGTTTGCTTGAAAATGGGATGACATTGCCATACTCTCCCTCAGTGTCACCACCATCTCCTGTGGCGGATTTGAAATTTACTCAGAAGAAGGAATATCCAGTTGATCCATCGCTTCCCGATATAAAAAACAGCATATATGCAAGTGATGAGTTTCGAATGTTTTCTTTCAAGGTCCGTCCTTGTTCACGTGCATACTCCCATGATTGGACTGAGTGTCCGTTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCTAGGAAGTTCCATTACAGCTGTGTGCCTTGCCCTGAATTTAGGAAAGGGGATTGCAGGCGTGGAGATATGTGTGAATATGCTCATGGGGTATTCGAAAGCTGGCTACACCCAGCTCTGTATCGAACACGCCTTTGTAAAGACGGCACTAGTTGTAATCGAAGGGTGTGCTTTTTTGCTCATGTTGCAGAGGAATTGAGGCCATTGCATCCGTCAACTGGATCTGCGGTTTCTTCACCACGTTCATCCGGATTTGCTCTTAATGTGATGGACATATCTGCTGCAATGAATCTTTTGCCTGGTTCACCCTCGTCAGTCTCTTCTATGTCTCCATCTCATTTTTCCCAGCCGATGTCCCCTTCTGGAAATGGCATGTCATTCTCAAGTGCTGCCTGGGCACAGCAAAATGTTCCAACTCTTCATTTACCAGGAACTAATTTTCAATCTAGTCGTTTGAGATCTTCTCTTAGTGCTCGCGACATTCCACCCGAAGACTTCAGTGTGCTGAGTGATTTTGATTGCCAGCAGCACCTTTTGAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTTCTTGTCGGTCTAAGGCACCAACTCCATCAAATCTTGAAGAGCTCTTTTCTGCTGAAATTTTGTCATCTCCACGGTATTCTGACCAATCAATGGCTTCTGTTTTTTCACCTTCACGTAAATCAGCTGCTATGAATCATTTTAACCAGGCTTCATTTGGCGTCCCTTCTTCAGGCAGGATGTCACCTAGAAGTATTGAACCAATCTCCCCAATGAGCCCTCACATGTCTCCATTTGCTCAGCATGAGAAACAGAAGCAACACCTACGGAGTATTAGTTCAAGGGACATTGGTTCCAACATCCCTGCCTCAGTTGTTGGATCCCCTACAAACCCACGGTCTAATTGGGGATCTCCTAATGGGATGGTTGATTGGTCGGTAAATGGAGATGAACTAAGTCACCAAATGCGCTCCGCTTCCCCATTTGAACATAAAATTAATGGGGAAGAGCCTGATCTATCATGGATCCAATCCCTAGTGAAGGATTCTTCACCTGAGATGGTTAAGGAGAAGTTTGCATCTTCTGGCCCTATTGCATCTGCTGATGGATTGAATTCCAATTCGCAAATTGAATCTATTGATCCTTCTGTTTTAGGAGCTTTGATCGAGCAATTGAAACTGGATCAACTTGTTGTCTAA 1998 0.4374 MKTLAVNTEDSFSSLLEFASNNDIEGFKLLLDKEGASSINKVGIWYGRQYGSKQIVLDHKTSLMIAATYGSLDVMKLILLYPEADVNFACGVSKMTALHCAASGGTVNVVDAVRLLILAGADVNCADANGNRPVDVIVVPPMLQSMKAVLEELLLDNASDNGSIGDFSVSVSVNSSSSGLLENGMTLPYSPSVSPPSPVADLKFTQKKEYPVDPSLPDIKNSIYASDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGDCRRGDMCEYAHGVFESWLHPALYRTRLCKDGTSCNRRVCFFAHVAEELRPLHPSTGSAVSSPRSSGFALNVMDISAAMNLLPGSPSSVSSMSPSHFSQPMSPSGNGMSFSSAAWAQQNVPTLHLPGTNFQSSRLRSSLSARDIPPEDFSVLSDFDCQQHLLNDLSCFSQPRPGSCRSKAPTPSNLEELFSAEILSSPRYSDQSMASVFSPSRKSAAMNHFNQASFGVPSSGRMSPRSIEPISPMSPHMSPFAQHEKQKQHLRSISSRDIGSNIPASVVGSPTNPRSNWGSPNGMVDWSVNGDELSHQMRSASPFEHKINGEEPDLSWIQSLVKDSSPEMVKEKFASSGPIASADGLNSNSQIESIDPSVLGALIEQLKLDQLVV 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01407 665 Gene3D - 268 331 - -
Trre15g01407 665 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Trre15g01407 665 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Trre15g01407 665 SMART ANK_2a 93 125 IPR002110 GO:0005515
Trre15g01407 665 SMART ANK_2a 10 41 IPR002110 GO:0005515
Trre15g01407 665 SMART ANK_2a 58 88 IPR002110 GO:0005515
Trre15g01407 665 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Trre15g01407 665 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Trre15g01407 665 Pfam Ankyrin repeats (3 copies) 19 127 IPR002110 GO:0005515
Trre15g01407 665 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Trre15g01407 665 MobiDBLite consensus disorder prediction 545 573 - -
Trre15g01407 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Trre15g01407 665 PANTHER UNKEMPT FAMILY MEMBER 17 616 IPR045234 -
Trre15g01407 665 SUPERFAMILY Ankyrin repeat 7 150 IPR036770 -
Trre15g01407 665 Gene3D - 2 147 IPR036770 -
Trre15g01407 665 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Trre15g01407 665 MobiDBLite consensus disorder prediction 543 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01407 Trre-Chr15 10966227 10968296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01407 5 662 C2H2 Transcription Factor Family AT5G12850 50.720 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g01407 Ank_2 8.2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01407 - - cam:101514203 1112.44