Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01406 ATGAATGAGAATGAGAATGAGAATGGCAATGCTAATGAACTCAACAAGAAGTGGAAATTTCCTTTCTTAGTTTTCTTCAATGATGCAAGACTTATTTTCAAGTTGGATGCACTTTCAAAAGAGATATTAGGGATTGCATTACCCTCTGCATTGGCTGTTGCTGCTGATCCTATTGCTTCTCTCATTGACACAGCATTCATAGGCCATTTGGGAGCCGTGGAACTTGCTGCTGCAGGAGTTTCCATTGCATTGTTCAACCAAGCTTCAAAGATTACCATATTTCCTCTTGTTAGTATTACAACATCATTTGTAGCTGAGGAAGATACTATCAAAAGAATGAATGAGGCTGAAAATGATAAGATCACTAAGTTAAGAACTGAAGTAACACCTAAGGATGATGTGCTTCAAGACATAGAGAAAGGGACACCCAAAGAGAATATTAAGGCTCCAAATGGATCTATGGTAGAACATAATGAAACAAATGGAACAGTGGCTAGAAGCTGTGGACACGAGGATGATAAGACCAATGGAGTTGATGCTACTACAAATCTATGCAAGTCACACTCAATTACAAAGAGGAATAAAAAAAGAAACATTGCTTCAGCATCAACAGCACTACTTTTTGGCTTAATTCTTGGCCTCCTTCAAGCATCAGTCCTTATATTTGGAGCCAAATTTCTATTAGGTGTCATGGGTGTAAGACATGGTTCTCCAATGCTAAAACCAGCAATGAAGTATTTAATATATAGATCATTTGGTGCACCTGCGGTTCTTCTCTCATTGGCAATGCAAGGAATATTTCGAGGATTTAAGGACACAACAACTCCTTTATATGTTATTGTTGCGGGGTATTCATTGAATGTGTTATTGGAGCCATTACTTATTTTTAAATTGAAAATGGGCATAAAAGGAGCAGCCATTGCACACGTTCTTTCCCAGTACATGATGGCATTCACCCTTTTCTTCATATTAATGAAAAAGGTCTATCTTATGCCTCCAAGAATAAAGGATCTACAAATTTTCAGGTTTCTTAGAAATGGAGGTCTGTTGATGACAAAGGTAATAGCAGTGACATTCTGTGTGACTTTAGCAGCCTCCTTGGCTGCAAGGTTAGGTCCAATTCCTATGGCTGCCTTTCAACCTTGCCTACAAATTTGGTTGGCAGCTTCCCTTTTTGCTGATGGTTTGGCTATAGCTGTACAGGCAATCCTAGCTGGTTCCTTTGCAGAGAAAGACTATAAAAGAACAACAGCAGCTGCAAAAAGGACTCTACAATTTGGTTTCATTTTAGGGTTGGGGCTCTCTCTTATTGTTGGATTTGGATTATACTTTGGAGCTGGAATATTTTCCAAAAATGCTCAAGTTATACACTTTATCCGAGTAGCCGTCCCGATTGTAGCTGCTACACAACCAATCAATACATTAGCCTTTGTCTTTGATGGTGTGAACTATGGAGCTTCTGATTTTGCATATGCTTCATATTCCTTGGTTATGGTGTCAATTGCAAGTGTTGGTGTAGAATTTCTTTTCTACAGGAGCAATCATTATGTTGGGATATGGATTGCATTATCCATCTATATGACTCTTCGCATGTTGGCTGGTGTCTGGAGGATGGGAACAGGAACAGGACCATGGAGCTATCTCAGAGGCCAATAA 1656 0.3919 MNENENENGNANELNKKWKFPFLVFFNDARLIFKLDALSKEILGIALPSALAVAADPIASLIDTAFIGHLGAVELAAAGVSIALFNQASKITIFPLVSITTSFVAEEDTIKRMNEAENDKITKLRTEVTPKDDVLQDIEKGTPKENIKAPNGSMVEHNETNGTVARSCGHEDDKTNGVDATTNLCKSHSITKRNKKRNIASASTALLFGLILGLLQASVLIFGAKFLLGVMGVRHGSPMLKPAMKYLIYRSFGAPAVLLSLAMQGIFRGFKDTTTPLYVIVAGYSLNVLLEPLLIFKLKMGIKGAAIAHVLSQYMMAFTLFFILMKKVYLMPPRIKDLQIFRFLRNGGLLMTKVIAVTFCVTLAASLAARLGPIPMAAFQPCLQIWLAASLFADGLAIAVQAILAGSFAEKDYKRTTAAAKRTLQFGFILGLGLSLIVGFGLYFGAGIFSKNAQVIHFIRVAVPIVAATQPINTLAFVFDGVNYGASDFAYASYSLVMVSIASVGVEFLFYRSNHYVGIWIALSIYMTLRMLAGVWRMGTGTGPWSYLRGQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01406 551 CDD MATE_DinF_like 40 540 IPR044644 -
Trre15g01406 551 Pfam MatE 353 503 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Trre15g01406 551 Pfam MatE 187 292 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Trre15g01406 551 NCBIfam MATE family efflux transporter 48 511 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Trre15g01406 551 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 6 549 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01406 Trre-Chr15 10952297 10964677 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01406 K26938 - gmx:100792203 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04469 11 56905087 56908236 Trre15g01406 15 10952297 10964677 ECH
Trre15g01406 15 10952297 10964677 Trre15g01406 15 10952297 10964677 ECH