Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01404 ATGGATGGCGGTGGCTTTCCTTATGCTGTGAATGAAGATTTCTTTCAAGGCATCAATCATGTTCCTGTCAATTATGCCTTTCCTGGTTCAATGCCTGATCAGGATAGTGTCTACTGGTCGATGAACACGAGTCCCTATAAGTTTGGAATGTATGGACCTGGAAGCACATCTTATTACAGTTCTTATGAGGTAAACGATCACTTGCCAAGAATGGAGAACAACAGGACCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCGGCTTCGACAGATTCTCCATCTAGAAGGGATGGAGTTAGCATGCAGACTATCCCTGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTGATATGGCAGGACAACATTGATCCTGATAATATGACCTACGAGGAACTACTGGACCTCGGGGAAGCAGTTGGAACTCAAAGCCGAGGTCTTCCTCAAGAACTTATTGACACGCTTCCAACCTCGAAGTACAAATTTGGCAGCTTATTCAAAAGAAAAAATTCTGGGAAAAAGTGTGTAATTTGCCAGATGACTTATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGTCATGTTTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTCGGCGAGGAATCTATGCAGTAG 696 0.4339 MDGGGFPYAVNEDFFQGINHVPVNYAFPGSMPDQDSVYWSMNTSPYKFGMYGPGSTSYYSSYEVNDHLPRMENNRTEWEYPSEVISEEPASTDSPSRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKKCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESMQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01404 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 227 IPR033276 GO:0004842|GO:0016567|GO:0046621
Trre15g01404 231 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Trre15g01404 231 MobiDBLite consensus disorder prediction 87 121 - -
Trre15g01404 231 SMART ring_2 180 220 IPR001841 -
Trre15g01404 231 Pfam Ring finger domain 179 221 IPR001841 -
Trre15g01404 231 FunFam E3 ubiquitin ligase BIG BROTHER 142 225 - -
Trre15g01404 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 225 IPR013083 -
Trre15g01404 231 MobiDBLite consensus disorder prediction 83 121 - -
Trre15g01404 231 SUPERFAMILY RING/U-box 179 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01404 Trre-Chr15 10910656 10914742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01404 5 231 C3H Transcription Factor Family AT3G63530 55.603 3.19e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01404 K19045 - gmx:100785290 404.831