Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01401 ATGACAGATCCTCAATCTAACTTTTTTGATGAATGGTTCAACTTCATGCTCCTCAACCCTCATAATCATCATAATCAATACTCTTCTTCTTCTTCTCATCAACCCTCATCATCTTCCTCAACCATAAATCCTCCTTCTCCACCTCTTAGAGAAGCTCTTCCTCTCATTAACAAATTAAGTCTCATAAATCATCATCAACAACATCAACAAAATGAACCCTCAAACACAACAATAGAACATGAAGAATACAAAAGAATATTGGAAAGGCATGGTGGTGATGATGGTGGTGATGAAAGTGTTACTGTTTCCCTACAAATAGGGCTTCCTAGAATGAATAGTAATTCTTCTTCTGATCTTGGATCAAGGATGGTCTCAAATTGTATAGAAATGGCTGAAAAAGAAGAAGCTAATATGATTTCTGAAAACCCTTTGGATAAATTGAACAAGGGTCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTGTGCTCTAAAACTTTCAATAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAAAGGAACACAACCAACAGCTATGTTAAGGCTTCCATGTTATTGTTGTGCACCTGGTTGCAAGCACAACATTGATCACCCTAGAGCAAAGCCTCTTAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATTAAACCTTATTTGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGAAAAATATGGTATTGTTTATGTGGTTCAGATTTTAAACATAAAAGGTCTCTTAAAGATCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGCTGGTTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 987 0.3617 MTDPQSNFFDEWFNFMLLNPHNHHNQYSSSSSHQPSSSSSTINPPSPPLREALPLINKLSLINHHQQHQQNEPSNTTIEHEEYKRILERHGGDDGGDESVTVSLQIGLPRMNSNSSSDLGSRMVSNCIEMAEKEEANMISENPLDKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYLCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAGSEIEHDGGSSM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01401 328 MobiDBLite consensus disorder prediction 25 51 - -
Trre15g01401 328 Gene3D Classic Zinc Finger 229 301 - -
Trre15g01401 328 MobiDBLite consensus disorder prediction 25 46 - -
Trre15g01401 328 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Trre15g01401 328 FunFam Zinc finger protein WIP2 220 302 - -
Trre15g01401 328 SMART c2h2final6 251 271 IPR013087 -
Trre15g01401 328 SMART c2h2final6 167 189 IPR013087 -
Trre15g01401 328 FunFam zinc finger protein WIP2-like 166 189 - -
Trre15g01401 328 SUPERFAMILY beta-beta-alpha zinc fingers 233 271 IPR036236 -
Trre15g01401 328 PANTHER ZINC FINGER PROTEIN WIP2 21 321 IPR043584 GO:0003700|GO:0010468
Trre15g01401 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 271 IPR013087 -
Trre15g01401 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Trre15g01401 328 SUPERFAMILY beta-beta-alpha zinc fingers 160 189 IPR036236 -
Trre15g01401 328 Gene3D Classic Zinc Finger 166 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01401 Trre-Chr15 10874911 10880081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01401 1 321 C2H2 Transcription Factor Family AT3G57670 54.813 1.18e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre15g01401 zf-C2H2_6 8.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01401 - - gmx:100794446 513.072