Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01389 ATGGCTCACAAATTAACCACCAACAAAGAAGAAACAGAATTTGAAGTACCTGAAACAACAATCACACCATGCATCAACAATAACAACAACAACCCTTCAACAACAATAACAACAGAATCTTCTAGATTTTTTGAAGACAACATCATCAAACCACCACCAACAGCCAGATCCGCCACGTCATCACGTTCTCCGAAGAGATCTCATCCTAGCAACGAAGAAACAGAAATTCAACCACAAACGACGTCGTCAGAAGCTAAACGTGCCGTTAATCGTTGCTCCGGTTGTCGAAAGAGAGTCGGTCTTACAGGATTCCGTTGCCGATGCGGTGATCTGTTTTGCTCCGATCATCGTTACTCCGATCGTCATGATTGTTCTTATGATTATAAAGCTGCTGGTAGAGAAACTATTGCTAGAGAAAATCCTGTTGTTAGAGCGGCTAAAATCGTTAAGCTCTGA 456 0.4211 MAHKLTTNKEETEFEVPETTITPCINNNNNNPSTTITTESSRFFEDNIIKPPPTARSATSSRSPKRSHPSNEETEIQPQTTSSEAKRAVNRCSGCRKRVGLTGFRCRCGDLFCSDHRYSDRHDCSYDYKAAGRETIARENPVVRAAKIVKL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01389 151 MobiDBLite consensus disorder prediction 19 44 - -
Trre15g01389 151 MobiDBLite consensus disorder prediction 73 88 - -
Trre15g01389 151 Pfam AN1-like Zinc finger 92 129 IPR000058 GO:0008270
Trre15g01389 151 SMART AN1_Zf_4 92 129 IPR000058 GO:0008270
Trre15g01389 151 MobiDBLite consensus disorder prediction 1 16 - -
Trre15g01389 151 PANTHER AN1-TYPE ZINC FINGER PROTEIN 54 150 - -
Trre15g01389 151 Gene3D - 57 147 IPR035896 -
Trre15g01389 151 SUPERFAMILY AN1-like Zinc finger 75 145 IPR035896 -
Trre15g01389 151 ProSiteProfiles Zinc finger AN1-type profile. 86 132 IPR000058 GO:0008270
Trre15g01389 151 FunFam Zinc finger AN1-type containing 6 65 147 - -
Trre15g01389 151 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01389 Trre-Chr15 10812826 10813281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01389 63 151 C2H2 Transcription Factor Family AT3G52800 52.809 3.71e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01389 - - lja:Lj3g3v0478150.1 197.978