Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01385 ATGGACAAGGGACCACCTCCTACCCTCTTCGTTAATGATGGTTCATTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAAAGGGGGAAAAATGCCAAACCAGAGGACTCTAAACCAATTAAAGTTGTTTCAGGACCTCTGACTCCTAAACCCTCCAATAGTAAGGCTAATGATGCAAAGAAATCTTCCCAGGGTAGTTCCGGTGGCAAACTTGCTTTCAGTTTGAAACAAAAGTCAAAGCTAGTGCCGCCCCCTGTGAAGTTGGCTGATGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAAATGATGCACCATTAAAACGACAAAAATTGGGTCAGGATGATGGCATTGAGCAATCATCAAGACAACTTGATGTTGCACCTTCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTCGCAAGTTTTGTGGCTAAAAATGGAAGACCATTTGAAGATGTTACACGGCAAAAAAACCCTGGGGATACACCTTTCAAGTTTTTGTTTGATGTTAAATGTTCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAAGAGAAGGCCCTTTCACAGTACAAAGAACCACAAGCAAATCATACTGTTGGGACAAGCATTTCATCTTCCAGACCAACAAATGGTCCTCCGAGATCATCCCAGCAGCATTCATCTTACCAAATCCCTGCTTCTGCTTTATATGATAGTGAAGTATCAAGGGCTTCTGGATCTTCAGTTCAAGCATTTTCAGTTGGAAGCTCGGATGAGCCTGGTGGATCATCAAGTGCTAGTTCTTTAGCACTAATGGAGTTTTACATGAAGAAAGCTGCACAGGAAGAAAAGTTTAAACAACCTAAGTATTCAAAAGACGAGATGCCCCCTCCTCCTTCTCTTCAACAAGGTTCAACAACTTTTGATGCATCAGCTTCAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCTCAGGAAGAACTTGAAAAGTTCTTGGCTAGCTGTAACGATGCAGCAGCAATGAAAGCTGCAAAGGAGGCTGCGGAGAAGGCCAAAATTCAGGCTGATAATGTGGGTCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGCTCTAGGAAGGGTATTTCAGATCCCATCATGGCGGGCAATGTTAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAGGATGACATCTATGAGCAATACAAAAAGCGAATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1323 0.4369 MDKGPPPTLFVNDGSFMERFRQLQQEQERGKNAKPEDSKPIKVVSGPLTPKPSNSKANDAKKSSQGSSGGKLAFSLKQKSKLVPPPVKLADDDEDEIDAGYVSNDAPLKRQKLGQDDGIEQSSRQLDVAPSPPSDPTVKKVADKLASFVAKNGRPFEDVTRQKNPGDTPFKFLFDVKCSDYKYYEHRLAQEEKALSQYKEPQANHTVGTSISSSRPTNGPPRSSQQHSSYQIPASALYDSEVSRASGSSVQAFSVGSSDEPGGSSSASSLALMEFYMKKAAQEEKFKQPKYSKDEMPPPPSLQQGSTTFDASASGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEAAEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01385 440 MobiDBLite consensus disorder prediction 23 38 - -
Trre15g01385 440 MobiDBLite consensus disorder prediction 299 313 - -
Trre15g01385 440 SUPERFAMILY Surp module (SWAP domain) 123 193 IPR035967 GO:0003723|GO:0006396
Trre15g01385 440 ProSiteProfiles G-patch domain profile. 357 404 IPR000467 GO:0003676
Trre15g01385 440 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Trre15g01385 440 SMART G-patch_5 355 402 IPR000467 GO:0003676
Trre15g01385 440 MobiDBLite consensus disorder prediction 284 322 - -
Trre15g01385 440 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Trre15g01385 440 Gene3D Surp module 114 196 IPR035967 GO:0003723|GO:0006396
Trre15g01385 440 MobiDBLite consensus disorder prediction 23 138 - -
Trre15g01385 440 MobiDBLite consensus disorder prediction 248 267 - -
Trre15g01385 440 MobiDBLite consensus disorder prediction 197 236 - -
Trre15g01385 440 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Trre15g01385 440 MobiDBLite consensus disorder prediction 48 74 - -
Trre15g01385 440 Pfam G-patch domain 358 401 IPR000467 GO:0003676
Trre15g01385 440 MobiDBLite consensus disorder prediction 195 236 - -
Trre15g01385 440 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 61 440 IPR040169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01385 Trre-Chr15 10779519 10782704 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01385 343 440 C2H2 Transcription Factor Family AT5G26610 32.743 8.54e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01385 K13096 - gmx:100786213 630.172