Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01384 ATGGACAAGGGACCACCTCCTACCCTCTTCGTTAATGATGGTTCATTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAAAGGGGGAAAAATGCCAAACCAGAGGACTCTAAACCAATTAAAGTTGTTTCAGGACCTCTGACTCCTAAACCCTCCAATAGTAAGGCTAATGATGCAAAGAAATCTTCCCAGGGTAGTTCCGGTGGCAAACTTGCTTTCAGTTTGAAACAAAAGTCAAAGCTAGTGCCGCCCCCTGTGAAGTTGGCTGATGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAAATGATGCACCATTAAAACGACAAAAATTGGGTCAGGATGATGGCATTGAGCAATCATCAAGACAACTTGATGTTGCACCTTCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTCGCAAGTTTTGTGGCTAAAAATGGAAGACCATTTGAAGATGTTACACGGCAAAAAAACCCTGGGGATACACCTTTCAAGTTTTTGTTTGATGTTAAATGTTCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAAGAGAAGGCCCTTTCACAGTACAAAGAACCACAAGCAAATCATACTGTTGGGACAAGCATTTCATCTTCCAGACCAACAAATGGTCCTCCGAGATCATCCCAGCAGCATTCATCTTACCAAATCCCTGCTTCTGCTTTATATGATAGTGAAGTATCAAGGGCTTCTGGATCTTCAGTTCAAGCATTTTCAGTTGGAAGCTCGGATGAGCCTGGTGGATCATCAAGTGCTAGTTCTTTAGCACTAATGGAGTTTTACATGAAGAAAGCTGCACAGGAAGAAAAGTTTAAACAACCTAAGTATTCAAAAGACGAGATGCCCCCTCCTCCTTCTCTTCAACAAGCATCAGCTTCAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCTCAGGAAGAACTTGAAAAGTTCTTGGCTAGCTGTAACGATGCAGCAGCAATGAAAGCTGCAAAGGAGGCTGCGGAGAAGGCCAAAATTCAGGCTGATAATGTGGGTCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGCTCTAGGAAGGGTATTTCAGATCCCATCATGGCGGGCAATGTTAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAGGATGACATCTATGAGCAATACAAAAAGCGAATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1305 0.4383 MDKGPPPTLFVNDGSFMERFRQLQQEQERGKNAKPEDSKPIKVVSGPLTPKPSNSKANDAKKSSQGSSGGKLAFSLKQKSKLVPPPVKLADDDEDEIDAGYVSNDAPLKRQKLGQDDGIEQSSRQLDVAPSPPSDPTVKKVADKLASFVAKNGRPFEDVTRQKNPGDTPFKFLFDVKCSDYKYYEHRLAQEEKALSQYKEPQANHTVGTSISSSRPTNGPPRSSQQHSSYQIPASALYDSEVSRASGSSVQAFSVGSSDEPGGSSSASSLALMEFYMKKAAQEEKFKQPKYSKDEMPPPPSLQQASASGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEAAEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01384 434 MobiDBLite consensus disorder prediction 23 38 - -
Trre15g01384 434 ProSiteProfiles G-patch domain profile. 351 398 IPR000467 GO:0003676
Trre15g01384 434 MobiDBLite consensus disorder prediction 284 314 - -
Trre15g01384 434 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Trre15g01384 434 Pfam G-patch domain 352 395 IPR000467 GO:0003676
Trre15g01384 434 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Trre15g01384 434 Gene3D Surp module 114 196 IPR035967 GO:0003723|GO:0006396
Trre15g01384 434 MobiDBLite consensus disorder prediction 23 138 - -
Trre15g01384 434 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Trre15g01384 434 MobiDBLite consensus disorder prediction 248 267 - -
Trre15g01384 434 MobiDBLite consensus disorder prediction 197 236 - -
Trre15g01384 434 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 434 IPR040169 -
Trre15g01384 434 MobiDBLite consensus disorder prediction 48 74 - -
Trre15g01384 434 MobiDBLite consensus disorder prediction 195 236 - -
Trre15g01384 434 SMART G-patch_5 349 396 IPR000467 GO:0003676
Trre15g01384 434 SUPERFAMILY Surp module (SWAP domain) 123 193 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01384 Trre-Chr15 10779519 10782704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01384 337 434 C2H2 Transcription Factor Family AT5G26610 32.743 7.98e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01384 K13096 - gmx:100786213 625.55