Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01383 ATGAGTATTGTGTATACTCAAGCTCTTGATTACTCTGACAGTGTTTCAAGTAGGAATTCAGAAATGGATTCAAAATTTAGTTACTCACAAACACAACAACATTGTGACCAAAACAATTCCGGTTTATCGCGGTACAATTCGGCTCCAAACTCATTGCTTACAAGTCTTGTGGACACAAGCATTGGTAATTTTTTCAATGATGAAACTTTCACAAATGATAACCATCATCAACAACATCAAAATCAACATTATTCTTCATCTACAAGTTCAGAAATGGAAACCATGTTGACAAATTCTGAATCATTGTATGAATTTGGAGATAATAAACCAATGAAAGAAGAAGAAAATGACCCTTTTTCAAATGGATTACAATACAATGGTTACTCTTATGATTCACAAAATCAGATGATTTATCAAACTCAACAGAATCAAGGATTGACAAATGGTTTTGATGGTGAATTTAGTGCAATGAGTTCCTTGGATTCTTCTAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGAGTTTTTGTCCAATTATTCAATTAATAATGGAAGTGTTAATGGACAAGCTATTACAACAACTAGTGGATTGCATTGTACTTTGAATTTCTCATCAAGATCATCCTCTAGCTCTATCAAGATGCCATTAATTGTTGAAAATGAACATGAAACTCTTCAAGGAAATGCTATTAAAAGTAGAAACATGGGAAATGATAATGGTATCACTAAATGTTACATACCTAGCTTCACCAATGACTATTGGGATAGTTCTACATTTAGTGCTCCAAAAAATGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGGATGTAGACTTTAGATACCAAAAACATGGTTTGAGTCACCATTTGAGTCTTCCAAGCTCTTCTACTAAGATGACTCCTCTGGAGAAATATTTACACCTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCTACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATAAAAAAATTGCAAGACCTTTTTCCTAATTCAGATAAGCAATCTAGCACAGCTGATATGTTGGATGAAGCAGTTCAGTACATTAAAGATTTGAGGAAACAACTTAAGATACTAACAGATACTAAGGCAAAGTGCAGATGTACAAGTAATTAG 1197 0.34 MSIVYTQALDYSDSVSSRNSEMDSKFSYSQTQQHCDQNNSGLSRYNSAPNSLLTSLVDTSIGNFFNDETFTNDNHHQQHQNQHYSSSTSSEMETMLTNSESLYEFGDNKPMKEEENDPFSNGLQYNGYSYDSQNQMIYQTQQNQGLTNGFDGEFSAMSSLDSSNNCSNLIRQKSSPAEFLSNYSINNGSVNGQAITTTSGLHCTLNFSSRSSSSSIKMPLIVENEHETLQGNAIKSRNMGNDNGITKCYIPSFTNDYWDSSTFSAPKNGEFMFSTSNALETQDVDFRYQKHGLSHHLSLPSSSTKMTPLEKYLHLQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNSDKQSSTADMLDEAVQYIKDLRKQLKILTDTKAKCRCTSN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01383 398 Coils Coil 369 389 - -
Trre15g01383 398 MobiDBLite consensus disorder prediction 14 43 - -
Trre15g01383 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 379 IPR011598 GO:0046983
Trre15g01383 398 Gene3D - 331 397 IPR036638 GO:0046983
Trre15g01383 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 394 IPR036638 GO:0046983
Trre15g01383 398 SMART finulus 335 385 IPR011598 GO:0046983
Trre15g01383 398 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 389 - -
Trre15g01383 398 Pfam Helix-loop-helix DNA-binding domain 335 379 IPR011598 GO:0046983
Trre15g01383 398 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01383 Trre-Chr15 10759130 10762283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01383 33 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 31.695 3.32e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g01383 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01383 - - cam:101493473 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00654 5 4369464 4371704 Trre15g01383 15 10759130 10762283 ECH
Trre15g01383 15 10759130 10762283 Trre15g01383 15 10759130 10762283 ECH