Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01373 ATGAATCCAGGGGTAACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTAGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATAACCCCGAAGCAGCAGCAGCTGCGGCCGGTACTGCTCCAGCTGCTGCTCCTGTCGGGGTTTCACCTGTGAGTGTAGGTTTGGATGGAACTGTTAAGAAGAAAAGGGGTCGACCAAGGAAATACGGGCCAGATGGGTCTGTCCATATGGCATTGACACCAGCGCCTATCTCATCTTCGGCTCCGCCCACTCTTCATGACTTCTCATCTGTGAAGCGTGTGAAACCACACGGGATGGAGTTCAAGAGGGCAAAGAAAGTTGTGATGGATCATCTCGGTGAGATGAACGGACACGCTGATGGCACAAACTTTATGCCACATTTCATCACTGTCAATGCCGGAGAGGATATTACGAACAAAGTTATATCTTTTTCTCAACAAGGGCCGCGAGCAATATGCATCTTGTCTGCTACCGGAGCGATTTCAAATGTTACACTCCGTCATCCAGATTCCTCTGGTGGTACTTTGACCTACGAGGGTCGTTTTGAGATCCTTAACTTGTCTGGATCATTCATGCCTACTGAGAATCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGCGTCTCGCTGGCAAGAACTGATGGTCGCGTTGTAGGCGGTGGAGTTGCTGGTGTTCTTATTGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAACGGCAATCAAGATCCGAAACTGAAGAAGCCAAAGTCTGATTATGCAGCAGCCACATTTACTCAAGCCATTGTGGTATCCTCGGCACCGCCACCACCACCCCAAACTAATAATGCTGAAAAAGAGGATTCCATGGGTGGCGGTGGACATGTACTGCAAAATTCTGGAAACGTGAACTCAAATTTTACTTCTCAGCCCAGCGCATTTCGAAGAGACAACAGCTGGGCCAACATGCAGTCTCTGCCGGACACAAGAAAGTCGGCTACTGATATAAACATATCTTTGCCTGATAGTTAA 1044 0.4904 MNPGVTVIGAEAPSAYHVAPRSEAPNQVHNPEAAAAAAGTAPAAAPVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVHMALTPAPISSSAPPTLHDFSSVKRVKPHGMEFKRAKKVVMDHLGEMNGHADGTNFMPHFITVNAGEDITNKVISFSQQGPRAICILSATGAISNVTLRHPDSSGGTLTYEGRFEILNLSGSFMPTENQGTRSRAGGMSVSLARTDGRVVGGGVAGVLIAASPVQVVVGSFLPNGNQDPKLKKPKSDYAAATFTQAIVVSSAPPPPPQTNNAEKEDSMGGGGHVLQNSGNVNSNFTSQPSAFRRDNSWANMQSLPDTRKSATDINISLPDS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01373 347 MobiDBLite consensus disorder prediction 275 347 - -
Trre15g01373 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 314 IPR039605 GO:0003680
Trre15g01373 347 CDD DUF296 134 247 IPR005175 -
Trre15g01373 347 Gene3D - 134 262 - -
Trre15g01373 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Trre15g01373 347 MobiDBLite consensus disorder prediction 299 347 - -
Trre15g01373 347 ProSiteProfiles PPC domain profile profile. 129 270 IPR005175 -
Trre15g01373 347 FunFam AT-hook motif nuclear-localized protein 1-like 134 265 - -
Trre15g01373 347 MobiDBLite consensus disorder prediction 44 76 - -
Trre15g01373 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01373 Trre-Chr15 10703540 10706739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01373 4 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.082 1.78e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01373 - - psat:127075781 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01373 15 10703540 10706739 Trre15g01373 15 10703540 10706739 ECH
Trre13g01925 13 16433021 16434792 Trre15g01373 15 10703540 10706739 PCT