Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01372 ATGGAAGGAAGAGAAGGTATGAATCCAGGGGTAACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTAGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATAACCCCGAAGCAGCAGCAGCTGCGGCCGGTACTGCTCCAGCTGCTGCTCCTGTCGGGGTTTCACCTGTGAGTGTAGGTTTGGATGGAACTGTTAAGAAGAAAAGGGGTCGACCAAGGAAATACGGGCCAGATGGGTCTGTCCATATGGCATTGACACCAGCGCCTATCTCATCTTCGGCTCCGCCCACTCTTCATGACTTCTCATCTGTGAAGCGTGTGAAACCACACGGGATGGAGTTCAAGAGGGCAAAGAAAGTTGTGATGGATCATCTCGGTGAGATGAACGGACACGCTGATGGCACAAACTTTATGCCACATTTCATCACTGTCAATGCCGGAGAGGATATTACGAACAAAGTTATATCTTTTTCTCAACAAGGGCCGCGAGCAATATGCATCTTGTCTGCTACCGGAGCGATTTCAAATGTTACACTCCGTCATCCAGATTCCTCTGGTGGTACTTTGACCTACGAGGGTCGTTTTGAGATCCTTAACTTGTCTGGATCATTCATGCCTACTGAGAATCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGCGTCTCGCTGGCAAGAACTGATGGTCGCGTTGTAGGCGGTGGAGTTGCTGGTGTTCTTATTGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAACGGCAATCAAGATCCGAAACTGAAGAAGCCAAAGTCTGATTATGCAGCAGCCACATTTACTCAAGCCATTGTGGTATCCTCGGCACCGCCACCACCACCCCAAACTAATAATGCTGAAAAAGAGGATTCCATGGGTGGCGGTGGACATGTACTGCAAAATTCTGGAAACGTGAACTCAAATTTTACTTCTCAGCCCAGCGCATTTCGAAGAGACAACAGCTGGGCCAACATGCAGTCTCTGCCGGACACAAGAAAGTCGGCTACTGATATAAACATATCTTTGCCTGATAGTTAA 1062 0.4896 MEGREGMNPGVTVIGAEAPSAYHVAPRSEAPNQVHNPEAAAAAAGTAPAAAPVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVHMALTPAPISSSAPPTLHDFSSVKRVKPHGMEFKRAKKVVMDHLGEMNGHADGTNFMPHFITVNAGEDITNKVISFSQQGPRAICILSATGAISNVTLRHPDSSGGTLTYEGRFEILNLSGSFMPTENQGTRSRAGGMSVSLARTDGRVVGGGVAGVLIAASPVQVVVGSFLPNGNQDPKLKKPKSDYAAATFTQAIVVSSAPPPPPQTNNAEKEDSMGGGGHVLQNSGNVNSNFTSQPSAFRRDNSWANMQSLPDTRKSATDINISLPDS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01372 353 MobiDBLite consensus disorder prediction 281 353 - -
Trre15g01372 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 256 - -
Trre15g01372 353 CDD DUF296 140 253 IPR005175 -
Trre15g01372 353 ProSiteProfiles PPC domain profile profile. 135 276 IPR005175 -
Trre15g01372 353 MobiDBLite consensus disorder prediction 305 353 - -
Trre15g01372 353 Gene3D - 140 268 - -
Trre15g01372 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 320 IPR039605 GO:0003680
Trre15g01372 353 FunFam AT-hook motif nuclear-localized protein 1-like 140 271 - -
Trre15g01372 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 253 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01372 Trre-Chr15 10703522 10706739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01372 6 284 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 54.693 1.43e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01372 - - psat:127075781 524.242