Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01364 ATGAATTATTTTGGAGGAAAAATTGGTGGTGGAAGTGATCAAAGAGGAAATGGTAGCGGTCCTTGTGGTGCTTGCAAGTTTTTGAGAAGAAAGTGTATAAAAGGTTGCATATTTGCACCATATTTTGATTCTGACCAAGGAACGGTTCATTTTGCTGCGGTTCATAAAGTGTTTGGTGCTAGTAATGCCTCTAAGTTACTCATGCGTATTCCAGCTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAAGCTCTTGCTAGGGCTAGAGACCCCGTTTATGGTTGTGTTGCTCACATCTTTGCACTTCAACAACAGGTCATGAGCTTGCAAGCAGAGTTAACCTATGTTCAGGCAACTCTTGCGACAATGCAGCGGCTCCCAATCTCACTAGCTCCATCTCTTCCAAACCCTCAAAGCTCATCATCACAAAGTCTTCATTCTTCCTCAGATCAGTTGGGAACAATTGCAGACTTGCAAAGTGCCTCTAACATTTCCATGCACTTTGATCCTCATCAACAACTTTCAACATCATTGGATTTTAGCAGTTTCTTCAATCATTCAGATCAACAACTTGAAGATGATGAACTCCAAGCTTTGGCTAGAGAATTTGTCTCTAGGTACTTGCCTGGTGTAAGATTCCAGCCATCTAATTCTCACTAA 666 0.4129 MNYFGGKIGGGSDQRGNGSGPCGACKFLRRKCIKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMSLQAELTYVQATLATMQRLPISLAPSLPNPQSSSSQSLHSSSDQLGTIADLQSASNISMHFDPHQQLSTSLDFSSFFNHSDQQLEDDELQALAREFVSRYLPGVRFQPSNSH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01364 221 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Trre15g01364 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 19 174 - -
Trre15g01364 221 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01364 Trre-Chr15 10637367 10645009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01364 20 219 AS2 family AT4G00210 54.630 8.80e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g01364 LOB 3.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01364 - - tpra:123898243 383.259