Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01363 ATGAGTATAAACTCCGGTTGTAGTGGTAGCGGTTGCAGTGGCAGTGGTGGAAATGGAGGTACTTGCGGCCCATGTGGTGCGTGCAAGTTTTTGAGAAGAAAGTGTATTCCGGGTTGTATCTTTGCGCCTTACTTTGACTCGGAGCAAGGTGCCTCACATTTTGCGGCGGTTCATAAGGTTTTTGGTGCTAGTAACGTTTCAAAGTTACTCCAAAATGTTCCGGTGCACAAGCGTCTCGATGCAGTTGTCACCATTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTGTTTATGGTTGTGTTGCTCATATCTTTACTCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTCTCCTACTTACAAGGCCACCTAGCCACATATGAGGTGCCTCAACCACCAACACCTTCTCCACCACAAGCACTTCCAATGGTCTCACTAGCCAATCTACCATTACTCTCTCCTTCATCCATTCCACCCACATATGACTTGTCTTCACTTTTTGATCCTATGGCCCAAACTCCTTCATGGGCCATTCATCAGAGGCCCAATGAGCCCCAACAATTTTTGGGTAGTGGCACATCAACAAGTAGTAATATTGGTGGTGGTGATCTTCAATCATTGGCAAGAGAGCTTTTGCATAGATATGGATCTGCTCCATCTTCTCATTCTCATTCCAAATGA 684 0.4547 MSINSGCSGSGCSGSGGNGGTCGPCGACKFLRRKCIPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFTLQQQVMSLQAELSYLQGHLATYEVPQPPTPSPPQALPMVSLANLPLLSPSSIPPTYDLSSLFDPMAQTPSWAIHQRPNEPQQFLGSGTSTSSNIGGGDLQSLARELLHRYGSAPSSHSHSK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01363 227 MobiDBLite consensus disorder prediction 184 204 - -
Trre15g01363 227 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Trre15g01363 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 133 - -
Trre15g01363 227 MobiDBLite consensus disorder prediction 184 206 - -
Trre15g01363 227 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01363 Trre-Chr15 10611252 10616313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01363 27 214 AS2 family AT4G00220 63.731 5.57e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g01363 LOB 3.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01363 K21994 - gmx:100779541 305.449