Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01360 ATGGATCAAGTATCAGCACAAGGTCGTCCTCTTCCTTTTCTCACTAGAGATCTTCATCTTCATCCTCATCATCAATTCCACACCAACCACCAAACCAATGAAGAAGAACAACAAAGTGGCAATGGCAACTTAAGCCGAGGCCAAAAACGAGAACGAAACAACAACGACGACACTCCAACCGGTGGAGATGGAAAAGACGATGGTGGTAGCGGAAGTGCGGGAGGAGGTAGTGGTGGTGAGATGGGAAGGAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAACCGAAACCACCCATTATTATCACGAGAGACAGCGCAAACGCACTCCGATCCCATGTGATGGAGGTCGCGAACGGATGTGACATCATGGAAAGTGTGACAGTCTTTGCACGGAGGAGACAGCGTGGTGTCTGTATCCTCAGTGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCACCTGGTGCGGTAGTCACACTTCACGGAAGATTTGAGATATTATCTTTATCTGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCGGCGTCAGGATTAGCCATATATCTAGCTGGCGGACAAGGACAGGTAGTCGGCGGTAGCGTGGTAGGACCGTTGTTGGCTTCCGGTCCCGTTGTTATCATGGCAGCTTCCTTTGGAAATGCTGCTTATGAAAGGTTGCCTTTAGAAGATGAAGAAACACCAGTGAATGTGCCAGGAAGTGGAGGGTTAGGATCACCAGGAACTATGGGAACACCACAGCAACAACAACAACAGCAGCAACAACAACTTGTGGCAGATCCTAATAATCCTTCATCACTTTTCCATGGAGGAGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGCTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA 921 0.494 MDQVSAQGRPLPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNNDDTPTGGDGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGSGGLGSPGTMGTPQQQQQQQQQQLVADPNNPSSLFHGGVPQNLLNSCQLPAEGYWGGSARPPF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01360 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 242 - -
Trre15g01360 306 ProSiteProfiles PPC domain profile profile. 107 245 IPR005175 -
Trre15g01360 306 MobiDBLite consensus disorder prediction 49 63 - -
Trre15g01360 306 Gene3D - 110 241 - -
Trre15g01360 306 PIRSF ESCAROLA 15 306 IPR014476 GO:0003680
Trre15g01360 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 223 IPR005175 -
Trre15g01360 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 288 IPR014476 GO:0003680
Trre15g01360 306 CDD DUF296 111 178 IPR005175 -
Trre15g01360 306 MobiDBLite consensus disorder prediction 250 282 - -
Trre15g01360 306 MobiDBLite consensus disorder prediction 26 101 - -
Trre15g01360 306 FunFam AT-hook motif nuclear-localized protein 110 237 - -
Trre15g01360 306 MobiDBLite consensus disorder prediction 233 282 - -
Trre15g01360 306 MobiDBLite consensus disorder prediction 32 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01360 Trre-Chr15 10554507 10555427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01360 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.087 7.51e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01360 - - gmx:100816243 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01360 15 10554507 10555427 Trre15g01360 15 10554507 10555427 ECH