Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01356 ATGGAAGTTAAACCTCTTCAAATTGTTCCCTCTTCACACAACAACAACAACACAACTGGAGGTGCAGGTGGACCCCAGAAGAAGATTGATGAGAATGGTGTAGTTGAAAATGTTGTTGTAGTGAAGGAAGAGAAAGAAGAAAACCCTTTGATCACACAAGTTCAAAGGCGTGAGCTTGATCATCAAGTTTTCATCTTTAATCATTTTGGTTATAACATTCCTCTTCCTTATTACCTTTTGCAATTTCCAAGTAATATGTCAGAGTTCAGTCGTCTAGGTTCTGATCACGTGACTATGGTGGATACAGAACCACATAGGTGTAGAAGAACCGATGGAAAGAAATGGAGGTGTGGTAAGAACACAGTACCTAATCAGAAGTACTGTGAACGCCATATGCATAGGGGTCGAAATCGTTCAAGAAAGCTTGTGGAAACATCTCAACTTAACTCTCCTAATTTGAAAACAAATCCTAGTATCGGTGGCAAGTCACATGCAAAATTACATCGGATGACACATTCTGTTTCAAATCCAAACCCTTCTGTCATTCAACACAGTGACGCATTCTCATACACCCCATCGAGGAGCTTCTGTATTGTAAATACATCTTCTGCTTGTGATCGGTCGAGAAATGTCATAGGTTCTGATGTCTCTGTGGTGACTCCTTGCTCCATTCTTTCCCCTGCAGTTGCACCTAAGATAACCACTTTCAGCAGCATGATGGCATCACTTACTTCGGATGATCAAAGTAGTCTTATTGTATGCAAGCAAGATGAGCAGATCAAGATGTCTATCAACAACATGAGTATTAAAAGCGGTACGAAGGGAAGCAATTCATGTGGAATTAATAACATCTCTAATGGAATAGGCTTCTCCCCAAAGAGTGTTCTTCAAGTTTCTGGTTGCAATTATTCATACCTCAACGACAGAAACAGTATAACAATAGAACCTGAACCCGGCAGATGCCGAAGAACAGATGGTAAGAAGTGGCGGTGCAAGAGTGCGGTTCTTCCCGGTCAGAAATATTGTGCAACACATATGCATAGAGGTGCGAAAAGGCGTTTTATAAACCATGAACCTCCTCCTCCTCCTCCAGCCGCTGCCATTGCTACTACTACAACTACTACTATTGGTTCTTCTGCTACCATTGCTTGGTCGCCTTATCCTTCAGCCGAAAGCGCATCAGACATTCAGAAAGCGGATTGTCAACTTCCAAACACAAAGCTTTCAATGTCGGCTCCAGACAGTGCACCCTTTGCCGAACGCAATGAGAAAAGTGGTGGCAGCAGTGGCACTGATACTAGTACCACCGTCACCGACACCATCAATGACTATCTTTCTAAGTAG 1344 0.4263 MEVKPLQIVPSSHNNNNTTGGAGGPQKKIDENGVVENVVVVKEEKEENPLITQVQRRELDHQVFIFNHFGYNIPLPYYLLQFPSNMSEFSRLGSDHVTMVDTEPHRCRRTDGKKWRCGKNTVPNQKYCERHMHRGRNRSRKLVETSQLNSPNLKTNPSIGGKSHAKLHRMTHSVSNPNPSVIQHSDAFSYTPSRSFCIVNTSSACDRSRNVIGSDVSVVTPCSILSPAVAPKITTFSSMMASLTSDDQSSLIVCKQDEQIKMSINNMSIKSGTKGSNSCGINNISNGIGFSPKSVLQVSGCNYSYLNDRNSITIEPEPGRCRRTDGKKWRCKSAVLPGQKYCATHMHRGAKRRFINHEPPPPPPAAAIATTTTTTIGSSATIAWSPYPSAESASDIQKADCQLPNTKLSMSAPDSAPFAERNEKSGGSSGTDTSTTVTDTINDYLSK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01356 447 MobiDBLite consensus disorder prediction 405 447 - -
Trre15g01356 447 ProSiteProfiles WRC domain profile. 315 364 IPR014977 -
Trre15g01356 447 MobiDBLite consensus disorder prediction 135 163 - -
Trre15g01356 447 PANTHER GROWTH-REGULATING FACTOR 5 300 417 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre15g01356 447 Pfam WRC 316 353 IPR014977 -
Trre15g01356 447 Pfam WRC 103 144 IPR014977 -
Trre15g01356 447 ProSiteProfiles WRC domain profile. 101 145 IPR014977 -
Trre15g01356 447 MobiDBLite consensus disorder prediction 1 29 - -
Trre15g01356 447 MobiDBLite consensus disorder prediction 142 159 - -
Trre15g01356 447 ProSiteProfiles QLQ domain profile. 50 85 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g01356 447 MobiDBLite consensus disorder prediction 8 23 - -
Trre15g01356 447 MobiDBLite consensus disorder prediction 422 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01356 Trre-Chr15 10512431 10515551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01356 49 353 GRF Transcription Factor Family AT2G45480 30.659 8.68e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01356 - - mtr:11412908 507.294