Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01355 ATGGCTGTGAAGGTCACAAAATGGACGAGAACCGATCGAAATAGAACCGATGGAATTATCCCTACAACGTGTTACTACTGGTTGAATGGAAGATGCAACCGAAATCCTTGTAGGTTTCTTCACAGCGAACCTCCGTTACCTTCTACAGCTTCTTGTAGTGTCAGCAAAACTGTAAATTGTAATGGAAGGAAGAGATGTTCTTTGTCTGAGTCTGAAAATTCTCTTCCTAAGCGTAAAATAAAGGTGGCGGTTTGGAATAGGAAGAGTGGAGATAGTATTGGTAAGACAGAAGTTGTCGAGGCTGCTCAGAGTTCATCGCCTAATTTATGCAAATATTGGATCGATGGAAACTGTGTGCACGGTGATAAATGTAGGGATATACATTCTTGGTTGTCTGGTGACCGGTTATCTGCAGTTATAAATTTTGAAGGACACAAGAAACTTGTCACTGGAATTACACTGCCAGTTGGGACGAACAAACTTTTCTCTGGAAGTACCGATGGCACAGTTCGAATATGGGACTGTTATAGTGGTCAGTGTGCTAATGTGATCAATCTTGGTGCTGAAGTAAACTCATTGATCAGCGAGGGCACTTGGATTTTTGTTGGTCTATCAAATATCGTCAAGGCATGGAATATTCAGACTGGTTCACAGTATACTCTTGATGGACCGAACGGGCGAGTCCTTGCCATGATTGTTGGGAATGATACACTTTTAGCTGGTGCAGAGGATGGTGTAATTTCTGCATGGAGGGGCATACCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTACGTGGCCACGCTAAATATGTTGTTTGCCTTACTGTCGGATGCCTCAACAAGAGGCTTTTCTCGGGATCCATGGACCACAGCATTAAGGTTTGGGATCTTGACACATTTGAGTGTAAAATGACAGTCAATGGCCATACTGACACAGTCACATCCCTTATTTGTTGGGACAACTTCTTACTATCAAGTTCATGGGACTGCACTATTAAGGTCTGGGCTGCCAATGAAGAGAACACTAATTTGGAAGTGGCATATTCGCACAACGTGGAAAATGGCATTGTTGCACTTAATGGGATGACTGATGCAGAAGATAACCATATACTGTTATGCTCTTGCCGAGACAATTCAGTTCGTCTCTATGAACTACCATCTTTTTCAGAGAGGGGTAGACTATTTGCTAGACGAGAAGTCAGATCAATTGAGAAAGGTCCTGGTGGACTCATCTTCACTGGAGATGGAACTGGTTTGGTGACTGTCTCAAAATGGTCGGAACAACCCAAGTTAGAAGCAGCATCCGCTTCCGCTTGA 1323 0.4331 MAVKVTKWTRTDRNRTDGIIPTTCYYWLNGRCNRNPCRFLHSEPPLPSTASCSVSKTVNCNGRKRCSLSESENSLPKRKIKVAVWNRKSGDSIGKTEVVEAAQSSSPNLCKYWIDGNCVHGDKCRDIHSWLSGDRLSAVINFEGHKKLVTGITLPVGTNKLFSGSTDGTVRIWDCYSGQCANVINLGAEVNSLISEGTWIFVGLSNIVKAWNIQTGSQYTLDGPNGRVLAMIVGNDTLLAGAEDGVISAWRGIPEANSPFKLVASLRGHAKYVVCLTVGCLNKRLFSGSMDHSIKVWDLDTFECKMTVNGHTDTVTSLICWDNFLLSSSWDCTIKVWAANEENTNLEVAYSHNVENGIVALNGMTDAEDNHILLCSCRDNSVRLYELPSFSERGRLFARREVRSIEKGPGGLIFTGDGTGLVTVSKWSEQPKLEAASASA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01355 440 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515
Trre15g01355 440 Pfam WD domain, G-beta repeat 261 298 IPR001680 GO:0005515
Trre15g01355 440 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Trre15g01355 440 Gene3D - 259 438 IPR015943 GO:0005515
Trre15g01355 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 301 - -
Trre15g01355 440 SUPERFAMILY WD40 repeat-like 113 422 IPR036322 GO:0005515
Trre15g01355 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 174 - -
Trre15g01355 440 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Trre15g01355 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Trre15g01355 440 PANTHER - 30 435 IPR044715 -
Trre15g01355 440 Gene3D - 77 258 IPR015943 GO:0005515
Trre15g01355 440 ProSiteProfiles Zinc finger C3H1-type profile. 104 131 IPR000571 GO:0046872
Trre15g01355 440 Gene3D - 10 73 - -
Trre15g01355 440 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Trre15g01355 440 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Trre15g01355 440 PRINTS G protein beta WD-40 repeat signature 325 339 IPR020472 -
Trre15g01355 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Trre15g01355 440 ProSiteProfiles Zinc finger C3H1-type profile. 23 44 IPR000571 GO:0046872
Trre15g01355 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 347 IPR001680 GO:0005515
Trre15g01355 440 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Trre15g01355 440 SMART c3hfinal6 18 43 IPR000571 GO:0046872
Trre15g01355 440 SMART WD40_4 343 386 IPR001680 GO:0005515
Trre15g01355 440 SMART WD40_4 259 298 IPR001680 GO:0005515
Trre15g01355 440 SMART WD40_4 135 174 IPR001680 GO:0005515
Trre15g01355 440 SMART WD40_4 301 338 IPR001680 GO:0005515
Trre15g01355 440 SMART WD40_4 214 251 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01355 Trre-Chr15 10509179 10511256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01355 133 302 Eukaryotic Initiation Factors Gene Family AT2G46290 26.984 3.83e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01355 - - tpra:123898633 683.33