Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01340 ATGGCTTTGGCAATTATGATAGCATCTTGGACTTGTTTGTGCATTGCAATCATATCAGTTGCAACATCAGAATCATCAAAAATTGTACAACAGATAGAAGCAAAAGCTCTTATTAATAGTGGTTGGTGGAATGATATCACTAACTATGCTCCAACTCATTGTCAATGGCCAGGTATAACATGCAATAATGAAGGAAGCATTACTAACATTTCTTTGCCACTTGAAATTCAATTAGGAAACAAGTTTGGTAAATTCAACTTCTCTTCTTTCAAAAATCTTGTTCATCTTAATCTACCTTCACATGGAATCATTGGTAACATTCCATTTCAACTAGCTACTCTTTCCAAACTCACTTTTCTTGACCTTTCTTGTAATGACATTGAAGGTCATATACCATCAAATATTTGGAGTTTAAAGAATTTAATCACACTTAACCTTTCTAATAATAAGCTTAATGGTACAATTTCATCATTTGTGGGACAGTTGACTAAGTTGACTTTTTTATATCTTGATACTAATATGTTTAATGGGTCTATTCCTCTTGAGTTAGGAGGGTTGAAAAATTTGATCCATTTGGGTTTGAGTAGTAATAGTTTTATTGGTTTAATACCTTTTGAGATTGGTCTATTGAAAAACCTTTTATTTCTTGATCTTAGTGACAATAATCTAAGTGGTGAATCACTTTCTTTTTTGTATAATTTGATTAATTTGGTTGAACTAAACTTGTCAAACAATGACATTTCTAGTATTGTCTCACATGAAATTGCAAAATTAACCCAATTGGAGTATCTCAAAATTTCAGATAACAAATTTTTTGGTACAATACCTTTAGAGATTGGAAAACTGTCCAAACTATTGGTTCTAGACTTTTCAAGGAACATGTTTTATGGAAAAATTCCAGCTAGTCTATCAACTTGCTATAACATGAAAGTGTTGAATTTGAACCATAACAATATAACAGGAAGCATTCCTTCTCATATTGGTGAGCTTGTTAATCTTGATTTAATTGATCTAAGTCATAACTTAATTAGTGGTAAAATACCTTATCAACTTGGAAATGTGAAATACACAAGAGTATTGGATCTTAGTTTTAATCAACTCATTGGAACCATTCCAAGTTCATTAGTATTATTGAGCAAGATTAATTTGTCCTATAATTCTCTAGAGGGTGATATTCCTTCTAGTCTTCAAGATTCTGTCGAACCAGACGCATTTATTGGAAATGAGTTTCTATGCAACCAATTCAGATATTCTGATACTACTTGTTACTCCTCACCTTCAAAAAGTAGACTTAGGACTCATATGAAGATTTTCCTTCCACTTATAGCTTTTCTTGCTCTTCTATGCTCTTTATATGTGTTCTTATGCTGGTGTAAGGCTTGTAGTTTCATGTTTAGGACAAAAGATATGAAGAATGGTGACTTTTTTTCAATATGGAACTATGATGGTAAAATTGCATATGAAGACATAATTAAAGCAACAGATGATTTTGACAACAAATATTGCATAGGAACTGGTGGTTATGGTAGTGTCTACAAAGCAAAGTTACCTAGTGGTAGAGTAGTGGCATTGAAGAAACTGCACAATTTAGAAGCTAATGAACCATTGATTAGAAGGATTTTTAAGAATGAAGTGAGAATGTTGACAAAGATAAGGCATAGAAGTATTTTGAAGCTATATGGTTTTTGTTTGCACAATAGATGCATGTTTTTGGTTTTGGAATACATGGAAAAGGGAAGTTTGTATTGTGTTCTACACAATGATGTTGAAGCATTGGAGTTGGATTGGAGCAAGAGGGTTGACATTGTTAAAGGAATTGCACATAGCTTATCATACCTTCATTATGATTGCAAGCCAGCAATTATTCATAGAGATGTGACAACAAAAAATGTTCTGTTGAACTCAGAAATGGAAGCTCGTCTTTCCGATTTTGGCATTGCGAGACTTCGGAATTCTAGTTCGTCAAATGAAACAATACTTGCGGGCACTTATGGATATCTTGCACCAGAACTTGCTTATACTGATAGTGTGACCGAGAAATGTGATGTGTATAGCTTTGGAGTGGTTGCTCTTGAAACTATAATGGGAAAACATCCAGGAGAACTTGTTTCATCATTAAGATTTGCATCCACTAGAAACATTCTCCTTAAAGATTTATTAGACAAGAGATTAATAGCAACCATAAATCAGCAATCTTCTCTAAGTTTAGCTCTTATAGCAACACTAGCCTTTGCATGTCTTCATTCTCATCCAAGGGATAGACCAACAATGCAAATAGTGTGTGACAAACTTGTCACAGGAAAACCCTCATTAACCAAACCATATGAAGAAATTTCTATAAGGGAGATGTTAAATCAGGAATTGTAA 2367 0.3321 MALAIMIASWTCLCIAIISVATSESSKIVQQIEAKALINSGWWNDITNYAPTHCQWPGITCNNEGSITNISLPLEIQLGNKFGKFNFSSFKNLVHLNLPSHGIIGNIPFQLATLSKLTFLDLSCNDIEGHIPSNIWSLKNLITLNLSNNKLNGTISSFVGQLTKLTFLYLDTNMFNGSIPLELGGLKNLIHLGLSSNSFIGLIPFEIGLLKNLLFLDLSDNNLSGESLSFLYNLINLVELNLSNNDISSIVSHEIAKLTQLEYLKISDNKFFGTIPLEIGKLSKLLVLDFSRNMFYGKIPASLSTCYNMKVLNLNHNNITGSIPSHIGELVNLDLIDLSHNLISGKIPYQLGNVKYTRVLDLSFNQLIGTIPSSLVLLSKINLSYNSLEGDIPSSLQDSVEPDAFIGNEFLCNQFRYSDTTCYSSPSKSRLRTHMKIFLPLIAFLALLCSLYVFLCWCKACSFMFRTKDMKNGDFFSIWNYDGKIAYEDIIKATDDFDNKYCIGTGGYGSVYKAKLPSGRVVALKKLHNLEANEPLIRRIFKNEVRMLTKIRHRSILKLYGFCLHNRCMFLVLEYMEKGSLYCVLHNDVEALELDWSKRVDIVKGIAHSLSYLHYDCKPAIIHRDVTTKNVLLNSEMEARLSDFGIARLRNSSSSNETILAGTYGYLAPELAYTDSVTEKCDVYSFGVVALETIMGKHPGELVSSLRFASTRNILLKDLLDKRLIATINQQSSLSLALIATLAFACLHSHPRDRPTMQIVCDKLVTGKPSLTKPYEEISIREMLNQEL 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01340 788 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Trre15g01340 788 SUPERFAMILY L domain-like 43 396 - -
Trre15g01340 788 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 231 765 - -
Trre15g01340 788 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Trre15g01340 788 FunFam Leucine-rich repeat receptor-like protein kinase 576 774 - -
Trre15g01340 788 SUPERFAMILY Protein kinase-like (PK-like) 476 764 IPR011009 -
Trre15g01340 788 ProSiteProfiles Protein kinase domain profile. 497 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01340 788 FunFam Leucine-rich repeat receptor protein kinase MSP1 462 575 - -
Trre15g01340 788 SMART LRR_typ_2 162 186 IPR003591 -
Trre15g01340 788 SMART LRR_typ_2 114 138 IPR003591 -
Trre15g01340 788 SMART LRR_typ_2 330 354 IPR003591 -
Trre15g01340 788 SMART LRR_typ_2 282 306 IPR003591 -
Trre15g01340 788 SMART LRR_typ_2 234 257 IPR003591 -
Trre15g01340 788 Pfam Protein kinase domain 500 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01340 788 Gene3D Ribonuclease Inhibitor 182 417 IPR032675 -
Trre15g01340 788 Gene3D Phosphorylase Kinase; domain 1 460 575 - -
Trre15g01340 788 ProSitePatterns Tyrosine protein kinases specific active-site signature. 621 633 IPR008266 GO:0004672|GO:0006468
Trre15g01340 788 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Trre15g01340 788 ProSiteProfiles Leucine-rich repeat profile. 236 257 IPR001611 GO:0005515
Trre15g01340 788 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 229 425 - -
Trre15g01340 788 FunFam Nuclear pore complex protein NUP107 26 175 - -
Trre15g01340 788 Pfam Leucine rich repeat 216 271 IPR001611 GO:0005515
Trre15g01340 788 ProSiteProfiles Leucine-rich repeat profile. 212 232 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01340 Trre-Chr15 10371406 10373963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01340 90 669 Receptor kinase-like Gene Family AT4G08850 37.864 9.17e-124 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre15g01340 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01340 - - aprc:113863342 1031.17