Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01309 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGAGGAGAAATGGTTTGTTGAAGAAAGCTTTTGAGTTGTCAGTGTTGTGTGATGCTGAAGTTGCTCTCATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCTAGCTCAAGCGTTTCAGAAACAATTGGACGATACCGAAGTCATTCCAGGATTAATAATACTCCAACAACATCTGAATCAATCGAAAATACTGAGCATTTGAAGGAAGAAGTAGAAAACATGAGGAGGAAGATTGAGCTTCTCGAGACTTCAAAACGGAAATTCTTAGGAGAAGGTTTGGGGTCTTGTTCCATTGAAGAACTACAAAAGATAGAGCAACAGATGGAGAAGAGTTTAAACAAAATTCGAACAAAAAAGACTCAGGTTTTCAGGGAACAAATTGAGCAGCTAAAAGAAAAGGAAAAAGCCCTATTTGCTGAAAATGTCAGGCTCTCTGAGAAGTATGACAACTATTCATCACAGGCAGCAAAAAAGGATCAAAGAGAAAATATGCATGAAGCTGAACCCTATGCTGATCAAAAGAGTCCAAGTTCAGATGTGGAGACTGAACTATTCATTGGTCTTCCAGAAACAAGAACAAGGCGCATTAATCATCCAAAGTTCTAG 678 0.3805 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSVSETIGRYRSHSRINNTPTTSESIENTEHLKEEVENMRRKIELLETSKRKFLGEGLGSCSIEELQKIEQQMEKSLNKIRTKKTQVFREQIEQLKEKEKALFAENVRLSEKYDNYSSQAAKKDQRENMHEAEPYADQKSPSSDVETELFIGLPETRTRRINHPKF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01309 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Trre15g01309 225 MobiDBLite consensus disorder prediction 174 225 - -
Trre15g01309 225 Coils Coil 122 145 - -
Trre15g01309 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g01309 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g01309 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g01309 225 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Trre15g01309 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre15g01309 225 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Trre15g01309 225 Coils Coil 85 115 - -
Trre15g01309 225 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Trre15g01309 225 FunFam MADS-box transcription factor 1 13 84 - -
Trre15g01309 225 Coils Coil 151 171 - -
Trre15g01309 225 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g01309 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre15g01309 225 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g01309 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g01309 225 MobiDBLite consensus disorder prediction 176 193 - -
Trre15g01309 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01309 Trre-Chr15 10149185 10156686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01309 1 159 MADS-box Gene Family AT2G45660 71.429 1.55e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre15g01309 K-box 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01309 - - psat:127075834 342.813