Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01306 ATGACATTGATCATCACTCCAGAAACAATTGAAAGATACCGAAGCCATAACAGGATAAATAATATACCAATGACATCTGAATCAGTTGAGAATGCTCAGCATTTGAGGCAAGAAGCAGAAAACATGATGAAGAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTCTGGGGTCTGCTTCCATTGATGAACTAAATAGGATAGAACAACAGTTAGAGAAGAGTATAACCAAAATCCGAGCAAAAAAGACTCAGGTTTTCAAGGAACAAATTGAACATCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGCCAAGCTATCTGAGAAGTATGGTAACTATTCATCACAGGCAACAAAAAAGGATCAAAGAGAAAATATACATGAAGCTAAACCCTATGCAGATCAAAGCAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGAACAAGACGCATTCCTCCAAAGTTCTAG 507 0.3767 MTLIITPETIERYRSHNRINNIPMTSESVENAQHLRQEAENMMKKIDLLETSKRKLLGEGLGSASIDELNRIEQQLEKSITKIRAKKTQVFKEQIEHLKEKEKALVAENAKLSEKYGNYSSQATKKDQRENIHEAKPYADQSSPSSDVETELFIGLPETRTRRIPPKF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01306 168 Coils Coil 29 59 - -
Trre15g01306 168 ProSiteProfiles K-box domain profile. 32 122 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g01306 168 Coils Coil 66 89 - -
Trre15g01306 168 Coils Coil 95 115 - -
Trre15g01306 168 Pfam K-box region 30 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre15g01306 168 MobiDBLite consensus disorder prediction 116 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01306 Trre-Chr15 10129125 10130960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01306 8 103 MADS-box Gene Family AT2G45660 63.265 4.73e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01306 - - psat:127075834 231.876