Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01301 ATGGATAATCATGGGTCTTCACCACCACCATATGGATATCCAAACCCTTATGGATACCCTCCATATCCATATCCACCTCCACCACCACCTCCAAATCAATCTCAAGGTCCTTCTGATCAATATCCATATCCATATCCATATCCACCTACAAGTACTAATCCATATTCATATGAATCAACATATCCACCAAATCCTTCACATTCCACAAACTACTCTTACTCATATCCACCACCACCTCCTCCTCCACCAAACCCTTTAGAGTTTCAAACTCATCAACCATCTAATGTTTATCCTTATCCTTACCCTTACCCTCAGCATTACCAATATCCTCCAATAAGTGATGATTCTAACTCTCCTCATAGTTCTGCTTATCCTCCTTTGAATGATCTTATGAGCAATGTTCAGATATCTGATAACACGCCAAGTGCACCGCCAGTTCGTGCACCGCCTGCACGTATAATGGCACTTTCTCCAATAATAACACATTCCTATTCAGCTTTAAATGAAGAGAAGAAAGAAGAGTTTTATGGTCATACTAGTAATAATTCTTTTTCAGGTTTTGAACATTCTTATTCTAGTTTAGGGGATTCACCAAATCTTTCGGGTTATTCTGGTGGTTCATTTGATGATTCAGTTCACAACCAAAGTTTGCAGATTGTTCCGGTTCAGAGTAAAGGGTCGTTGAGAGTTTTGCTCTTGCATGGTAATTTAGATATATGGGTTCATGGAGCTAAGAATCTTCCAAATATGGACATGTTTCATAAAACTTTAGGTGATATGTTTGGTAAATTTCCTGGTAATGTTAGTAACAAGATTGAGGGATCAATGAGTAGGAAGATTACTAGTGATCCTTATGTGACGATTTCTTTGTCAAATGCTGTAGTTGGTAGGACATTTGTGATTAGTAATAGTGAAAATCCTGTTTGGGAGCAGCATTTTCATGTTCCTGTTGCACATCATGCTGCTGAAGTGCATTTTGTTGTGAAGGATAGTGATGTGGTAGGTTCACAGCTTATTGGTGTTGTGGCGATTCCGGTCGAACAATTATACTCAGGTGAAAGAGTACAAGGGACTTACCCTATTCTTAATAGCAATGGGAAGCCTTGTAAGCAAGGTGCTGTTTTGAGTGTTTCCATTCAATTCATTCCAATAGAGAATCTGATCATGTATCATCAAGGCGTTGGAGCAGGGCCGGACTATATTGGTGTGCCGGGAACATATTTTCCATTGAGGAAAGGTGGAACTGTTACTCTATATCAAGATGCTCATGTTCCGGATGGAAGTCTCCCTAATGTCATACTTGATCATGGGATGTATTATGCTCATGGACAGTGTTGGCGTGATATCTTTGAAGCCATACGTCAGGCGAAGCGTTTGGTTTACATTACTGGGTGGGCAGTGTGGCACAAAGTTAGGTTGATAAGGGACGCTACTAGTCGCAGTCATGCTTCAGAATACACGCTCGGTGATCTTCTGAGGTCTAAGTCTCAGGAAGGAGTAAGAGTGCTTCTTCTTGTTTGGGATGACCCTACCTCAAGAAACATTCTTGGTTATAAAACAGATGGTGTCATGGCGACGCATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTACTTTGTCCTCGAATGGCCGGAAAACGACATAGCTGGGCTAAGCAACAGGAAGTTGGAACAATATATACACATCATCAGAAGACTGTAATTGTAGATGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCCTTTGTTGGCGGACTTGATTTATGTGACGGCCGATATGATACTCCCCAACATCCGCTCTTTAGGACACTGAAGACACTGCATAAGGATGACTATCACAATCCTACTTTCACGGGTAATACTGGTGGCTGTCCGCGGGAACCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTACGATGTTTTGACAAATTTTGAGGAGCGCTGGTTAAGAGCTGCGAAACCTACAGGGATAAAAAAGCTGAAGAGTTTATATGATGATGCTTTGCTTAAAATAGAAAGAATTCCAGATATTCTCCGTATATCAGACATTCCTAGTATTGGTGATGATAATCCTGCATCTTGGCATGCTCAGATATTTCGTTCAATTGATTCAAACTCTGTCAAGGGATTTCCAAAGGAGCCAAAAGATGCACCGATAAAGAACCTAGTATGCGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATCCGCGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGTTCCTCGTACAATTGGAACCAACATAAAGACCTTGGTGCTAATAATTTAATTCCAATGGAAATTGCGCTGAAGATTGCTGAAAAAATAAAGGCAAATGAGAGGTTTGCAGTATACATAGTTATTCCAATGTGGCCGGAGGGTGTTCCAACAGGTGCTGCCACTCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGAAATCGAGAAGCCATAGACATTCATGAAAATATTACTGTATCTGGAACTCCTCCTCCACCAAATACTCCACAAGCAAATAGTCGAAATAACCGGCGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCAGCAAACATCAATCAGCGCTCTATGGAAGGAACTAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTGAATATACATGGGCAAGAAAACAGTCTTATCCACGCGGACAGGTTCATGGATACAGGATGTCTCTTTGGGCAGAACATACGGGCACAATCGAAGACTGTTTCTTACAACCAGAGAGTTTGGAATGTGTGAGAAGGGTTCGAACAATGTCAGAAATGAACTGGAAACAATTTTCATCAAACGACTTGACAGAGATGAGAGGGCATTTACTAAAGTACCCTGTTGAAGTTGATAGAAAGGGTAAGGTTAGACCTCTTCCTGGTCAAGAAGAGTTTCCTGATGTTGGAGGGAAGATAGTAGGATCATTTATTGCCATTCAAGAAAATCTAACCATTTGA 3159 0.4074 MDNHGSSPPPYGYPNPYGYPPYPYPPPPPPPNQSQGPSDQYPYPYPYPPTSTNPYSYESTYPPNPSHSTNYSYSYPPPPPPPPNPLEFQTHQPSNVYPYPYPYPQHYQYPPISDDSNSPHSSAYPPLNDLMSNVQISDNTPSAPPVRAPPARIMALSPIITHSYSALNEEKKEEFYGHTSNNSFSGFEHSYSSLGDSPNLSGYSGGSFDDSVHNQSLQIVPVQSKGSLRVLLLHGNLDIWVHGAKNLPNMDMFHKTLGDMFGKFPGNVSNKIEGSMSRKITSDPYVTISLSNAVVGRTFVISNSENPVWEQHFHVPVAHHAAEVHFVVKDSDVVGSQLIGVVAIPVEQLYSGERVQGTYPILNSNGKPCKQGAVLSVSIQFIPIENLIMYHQGVGAGPDYIGVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVILDHGMYYAHGQCWRDIFEAIRQAKRLVYITGWAVWHKVRLIRDATSRSHASEYTLGDLLRSKSQEGVRVLLLVWDDPTSRNILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRMAGKRHSWAKQQEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLKTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPTGIKKLKSLYDDALLKIERIPDILRISDIPSIGDDNPASWHAQIFRSIDSNSVKGFPKEPKDAPIKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAIDIHENITVSGTPPPPNTPQANSRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPEYTWARKQSYPRGQVHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMSEMNWKQFSSNDLTEMRGHLLKYPVEVDRKGKVRPLPGQEEFPDVGGKIVGSFIAIQENLTI 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01301 1052 Gene3D Endonuclease Chain A 721 956 - -
Trre15g01301 1052 SUPERFAMILY Phospholipase D/nuclease 718 984 - -
Trre15g01301 1052 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 233 384 IPR035892 -
Trre15g01301 1052 Gene3D Endonuclease Chain A 436 677 - -
Trre15g01301 1052 PANTHER PHOSPHOLIPASE D 227 1042 IPR015679 -
Trre15g01301 1052 FunFam Phospholipase D 711 944 - -
Trre15g01301 1052 MobiDBLite consensus disorder prediction 21 126 - -
Trre15g01301 1052 Gene3D C2 domain 230 376 IPR035892 -
Trre15g01301 1052 MobiDBLite consensus disorder prediction 110 126 - -
Trre15g01301 1052 SUPERFAMILY Phospholipase D/nuclease 445 662 - -
Trre15g01301 1052 Pfam Phospholipase D Active site motif 564 598 IPR001736 GO:0003824
Trre15g01301 1052 Pfam Phospholipase D Active site motif 899 925 IPR001736 GO:0003824
Trre15g01301 1052 ProSiteProfiles C2 domain profile. 224 359 IPR000008 -
Trre15g01301 1052 Pfam Phospholipase D C terminal 972 1042 IPR024632 -
Trre15g01301 1052 FunFam Phospholipase D delta 436 677 - -
Trre15g01301 1052 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 563 598 IPR001736 GO:0003824
Trre15g01301 1052 SMART C2_3c 236 358 IPR000008 -
Trre15g01301 1052 FunFam Phospholipase D delta 230 377 - -
Trre15g01301 1052 MobiDBLite consensus disorder prediction 21 51 - -
Trre15g01301 1052 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 898 925 IPR001736 GO:0003824
Trre15g01301 1052 MobiDBLite consensus disorder prediction 72 88 - -
Trre15g01301 1052 CDD C2_plant_PLD 230 382 - -
Trre15g01301 1052 SMART pld_4 563 598 IPR001736 GO:0003824
Trre15g01301 1052 SMART pld_4 898 925 IPR001736 GO:0003824
Trre15g01301 1052 MobiDBLite consensus disorder prediction 52 71 - -
Trre15g01301 1052 Pfam C2 domain 235 361 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01301 Trre-Chr15 10057713 10064861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01301 14 1052 Phospholipase D Gene Family (Wang group) AT2G42010 67.887 0.0 1452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01301 K01115 - gmx:100805294 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01301 15 10057713 10064861 Trre15g01301 15 10057713 10064861 ECH