Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01297 ATGACTAGAAAAAAGGTGAAACTTGCTTTCATTTCAAATGATGCTACAAGGAAAATAACATACAAGAAAAGGCAAAAGAGTCTATTGAAAAAGGTTGATGAACTAAGCACCCTTTGTGGAATTGATGCATGTGCTATAATTTATAGCTCTTTTGATCCTCAACCTGAGATTTGGCCATCACCATTGGGAGTCCAAAGGGTGCTCTCAAAATTCAGGACAATACCTGAATTTGATAAGAACAAAAAAATGTTGAATCAAGAGACGTTCATGAAACAAAGGATTTTGAAGGCTGAAGAGCAGGTGAAGAAGCAACTGAAAGATAATAAGGAGAAAGAGATGACACTTCTAATGTTTCAATGTCTTAATTTAGGTGAAATTGTCCACAACAATATGTCAATGACTGATTTGAATCATCTTGATTGGTTGATCGATCAAAATTTGAAGGACATTGACAAAAGGTTGGACGTAGAAGATAATAATAACAGTCAAAATCAAATCATGACTACTCAAAACCAAATTCCTGTCCAAATGGCACAACCACCACCACCACCAACACCTTGGAAGGAAGAAATGACAATGATGATGGGTCATAGTAGGATGACAATAAATAATGCTGACATCATGCAAAGGAAGTTCTTGATGGATTTGACGATGAATGGTAATGAGGATGAGACAATTCCATTTGGTCAACCTCATGCAAATCTTCAAAGTGGATTTTGA 720 0.3597 MTRKKVKLAFISNDATRKITYKKRQKSLLKKVDELSTLCGIDACAIIYSSFDPQPEIWPSPLGVQRVLSKFRTIPEFDKNKKMLNQETFMKQRILKAEEQVKKQLKDNKEKEMTLLMFQCLNLGEIVHNNMSMTDLNHLDWLIDQNLKDIDKRLDVEDNNNSQNQIMTTQNQIPVQMAQPPPPPTPWKEEMTMMMGHSRMTINNADIMQRKFLMDLTMNGNEDETIPFGQPHANLQSGF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01297 239 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre15g01297 239 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre15g01297 239 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Trre15g01297 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g01297 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre15g01297 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g01297 239 PANTHER MADS BOX PROTEIN 3 154 - -
Trre15g01297 239 Coils Coil 94 115 - -
Trre15g01297 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre15g01297 239 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Trre15g01297 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre15g01297 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01297 Trre-Chr15 10017138 10017857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01297 1 163 Type I MADS-box Gene Family AT5G48670 57.669 1.39e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g01297 SRF-TF 6.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01297 - - psat:127080453 255.758